why __init__.py is empty?

[Threeman8]

Hi, I would like to know why isONcorrect/modules/init.py is blank? What should I write on it? THX

[Threeman8]

When I run ./correction_pipeline.sh_o 0.fastq ./output/ 8 I encountered Traceback (most recent call last): File "/miniconda/envs/isoncorrect/bin/isONclust", line 10, in <module> from modules import get_sorted_fastq_for_cluster ImportError: cannot import name 'get_sorted_fastq_for_cluster' from 'modules' (/miniconda/envs/isoncorrect/bin/modules/__init__.py)

[ksahlin]

Hi @Threeman8,

You don't need to write anything in the __init__ file.

Not sure why you get this error, but my guess is that you have isONclust installed outside your isONcorrect conda environment. So it finds an isonclust installation outside the environment and gets confused. (haven't seen this cause an error before though, so it's only a guess)

My suggestion is to install isONclust within your isONcorrect environment. This may require uninstalling the other isONclust installation if conda complains.

[Threeman8]

Hello, ksahlin. I will try to create the environment again and install the isoncorrect in this environment. Thanks!