obnb
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krishnanlab
A Python toolkit for setting up benchmarking dataset using biomedical networks
updates: - [github.com/adrienverge/yamllint.git: v1.33.0 → v1.35.1](https://github.com/adrienverge/yamllint.git/compare/v1.33.0...v1.35.1) - [github.com/pycqa/isort: 5.12.0 → 5.13.2](https://github.com/pycqa/isort/compare/5.12.0...5.13.2) - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v5.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v5.0.0) - [github.com/asottile/pyupgrade: v3.15.0 → v3.17.0](https://github.com/asottile/pyupgrade/compare/v3.15.0...v3.17.0) - [github.com/psf/black: 23.11.0 → 24.10.0](https://github.com/psf/black/compare/23.11.0...24.10.0)
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Bumps [pandas](https://github.com/pandas-dev/pandas) from 2.0.3 to 2.2.1. Release notes Sourced from pandas's releases. Pandas 2.2.1 We are pleased to announce the release of pandas 2.2.1. This release includes some new features,...
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Bumps [numpy](https://github.com/numpy/numpy) from 1.23.3 to 1.26.4. Release notes Sourced from numpy's releases. v1.26.4 NumPy 1.26.4 Release Notes NumPy 1.26.4 is a maintenance release that fixes bugs and regressions discovered after...
Bumps [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints) from 1.23.0 to 2.0.0. Release notes Sourced from sphinx-autodoc-typehints's releases. 2.0.0 What's Changed Add option to force unions (and options) to be rendered with bars by @hoodmane in...
For example, HumanNet individual channels need to be archived (then the hardcoded `HumanNet_CC` and `HumanNet_FN` can be deprecated)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 6.2.1 to 7.2.6. Release notes Sourced from sphinx's releases. Sphinx 7.2.6 Changelog: https://www.sphinx-doc.org/en/master/changes.html Sphinx 7.2.5 Changelog: https://www.sphinx-doc.org/en/master/changes.html Sphinx 7.2.4 Changelog: https://www.sphinx-doc.org/en/master/changes.html Sphinx 7.2.3 Changelog: https://www.sphinx-doc.org/en/master/changes.html Sphinx 7.2.2...
https://github.com/krishnanlab/obnb/blob/2588bc4f17c47fef46bcd2bf589bb0e7f0849b4f/src/obnb/graph/sparse.py#L712
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A Python toolkit for setting up benchmarking dataset using biomedical networks