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support for passing dataset keys for Zarr files

Open Mohinta2892 opened this issue 1 year ago • 1 comments

Hi!

I am wondering if it is possible to allow passing specific dataset keys for zarr files (changes anywhere load_stack/smart_load gets called). Right now, the data to be processed needs to be under '/' (root group). However, often pmaps can be stored like 'volumes/pmaps'. The zarr could also contain other keys ('volumes/raw') and I feel plantseg should be able to handle that and just load the dataset specified for processing.

Best, Samia

Mohinta2892 avatar May 24 '23 17:05 Mohinta2892