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Major refactor of all PlantSeg process and add support for napari as viewer

Open lorenzocerrone opened this issue 2 years ago • 0 comments

  • [x] Unet predictions follow the AbstractStep like the rest of the pipeline
  • [x] New in-memory array loader and predictor
  • [x] Implement all steps as pure functions (preprocessing, predictions, segmentation)
  • [x] Unified all file io in a new subpackage plantseg.io
  • [x] Fix testing
  • [x] Add napari viewer and widgets
  • [x] Add tracking of napari workflow for headless predictions

lorenzocerrone avatar Aug 03 '22 09:08 lorenzocerrone