complex-upset
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How can I reduce the file size of the .eps UpSet figure?
Objective Reduce the file size of the .eps UpSet figure produced in R.
Code
upset(
M1_BinaryMatrix,
colnames(M1_BinaryMatrix),
sort_intersections_by='ratio',
intersections='all',
min_degree=2,
set_sizes=(
upset_set_size(position='right')
+ geom_text(aes(label=paste0(round((..count../nrow(M1_BinaryMatrix))*100), '%')), hjust=1.1, stat='count', color='white')
+ expand_limits(y=1000)
+ ylab("")
+ theme(axis.text.x = element_blank())
),
#
base_annotations=list(
'Intersection ratio'=intersection_ratio(text_mapping=aes(label=!!upset_text_percentage()))
# 'Intersection ratio'= intersection_ratio(text_mapping=aes(label=paste0(round(
# !!get_size_mode('inclusive_intersection')/!!nrow(head(M1_BinaryMatrix, 1000)) * 100
# ), '%')))
+ ylab("")
+ theme(axis.text.y=element_blank())
),
#
name="",
wrap=TRUE,
stripes=c(alpha('grey90', 0.45), alpha('white', 0.3)),
matrix = intersection_matrix(
geom=geom_point(
shape='square',
size=4
),
segment=geom_segment(
linetype='solid'
),
outline_color=list(
active='darkorange3',
inactive='grey70'
)
)
) + labs(title = "", caption = "")
ggsave(
"ups.eps",
plot = last_plot(),
device = 'eps',
# scale = 1
# width = NA,
# height = NA,
# units = c("in", "cm", "mm", "px"),
dpi = 300,
limitsize = TRUE
# bg="transparent"
)
Context (required) ComplexUpset version: 1.3.3
R version 4.2.2 (2022-10-31 ucrt)
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)