locator

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Use case with microhaplotypes?

2

Hi, I was wondering what steps might need to be taken in order to use Locator with GTSeq microhaplotypes? The genotypes would basically be haplotype numbers. There could be multiple...

btmartin721

Bumps [scipy](https://github.com/scipy/scipy) from 1.4.1 to 1.10.0. Release notes Sourced from scipy's releases. SciPy 1.10.0 Release Notes SciPy 1.10.0 is the culmination of 6 months of hard work. It contains many...

dependabot[bot]

Interested in use for haploid organisms

1

Hello, I am interested in using the locator algorithm for haploid organisms. The help text says to file an issue. Thank you, Mike

mhnorris

Hello, I am getting this error and I can't figure out what is the problem. I have compared my files with the format of a file I ran last year...

aglorias

Query about using locator within marine environments

1

Hi there, I'm hoping to use locator to predict the origin of some kelp rafts i've collected. I have wide spanning RADseq data across the range of the species, and...

wpearman1996

Calculating area of window densities

2

Hi, This is a little of an out-the-box question, but I'm wondering if you have a method in mind to be able to calculate the area of the window estimates...

Imogen-D

IndexError: arrays used as indices must be of integer (or boolean) type

1

Hello, I am trying to run locator on a .vcf file. I keep running into the error below. I have tried adjusting the chromosome codes in the VCF to be...

nafusco22

GPU Out of memory

2

Hi CJ and Andy, I ran into out of memory issue with GPU while running bootstraps. Here is a portion of the log: *2021-11-26 16:42:28.228503: W tensorflow/core/framework/op_kernel.cc:1745] OP_REQUIRES failed at...

gaushi

This PR adds more informative error messages for merging sample metadata. The old version worked correctly but didn't point to which sample IDs were off. It also had a slightly...

cjbattey

Feature request: Ability to use Genotype likelihoods

3

While most human population genomics datasets are now able to achieve >30x sequencing coverage on the regular, for a lot of non-model organism studies its becoming more popular to instead...

alexpiper