chromosight
chromosight copied to clipboard
Recommend parameters of borders detect
Hi
I'm a green hand of Hi-C.
What are the recommended parameters of chromosight detect --pattern borders
?
Especially min-dist
and min-dist
.
What I have used is
chromosight detect \
--threads 8 \
--min-dist 10000 \
--min-dist 1000000 \
--pattern $pattern \
$PAIRS_FILE \
$output_prefix
But the contact map plotted by .tsv
file is strange.
Thanks.