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Published 20 hours ago • verified publisher icon konstantint
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Pure-python implementation of UCSC liftOver genome coordinate conversion

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PAR1 and PAR2 liftover from hg19 to hg38?

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Hi Konstantin, I am wondering is there any trick part for PAR1 and PAR2 liftover from hg19 to hg38? Thanks Shicheng

Shicheng-Guo avatar Shicheng-Guo

problem with loading canFam3ToHg38.over.chain

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I have a Windows system with 32GB ram and LiftOver("canFam3ToHg38.over.chain") took all of the memory and did not finish. cProfile.run of the same command with a portion of the chain...

rkimoakbioinformatics avatar rkimoakbioinformatics

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Pure-python implementation of UCSC liftOver genome coordinate conversion

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