loftee
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Fail to instantiate plugin LoF
Hi , I am having the following error:
WARNING: Plugin 'LoF' went wrong: Can't locate object method "prepare" via package "false" (perhaps you forgot to load "false"?) at /home/ec2-user/.vep/Plugins/gerp_dist.pl line 129, <ANONIO> line 53522.
I have seen this issue in a previous post, but was unresolved.
Is there any assistance on this please?
Thanks in advance, Nuno
could resolve by giving the conservation_file
path in the command line as worked in my example ./vep --plugin LoF,loftee_path:/Tools/ensembl-vep/loftee,human_ancestor_fa:/SupportFiles/vep/LOFTEE/human_ancestor.fa.gz,phylocsf_data:/SupportFiles/vep/LOFTEE/phylocsf_gerp.sql
. Hope this help!