kltm
The previous work in the MGI remainders project concentrated on the GPAD 2.0 output, which is what MGI will pick up--no need for the GPI as they are the SoT....
The new version of ontobio that @sierra-moxon has been working on is almnost completely compatible with what we currently use, but defaults to 2.0. We would like to not do...
Our main metadata currently points to the "old" MGI-provided upstreams. Switch to our new / internal files.
This is coming out of a meeting and email thread with Markus K. The given file is currently at: http://skyhook.berkeleybop.org/ecocyc-2024-04-19-upstream.gaf.gz The idea would be to either provide a "simple" SOP...
Found during a scan for https://github.com/geneontology/go-site/issues/2246, the following ZFIN metadata is in error: ``` 0.001!date-generated: 2024-03-14 ```
Closing this ticket means that @pgaudet has been provided a sufficiently final version of any example file(s) for GPAD / GPI 2.0, so that she can: - let downstreams know...
As part of @sierra-moxon 's work, we explicitly made the choice to have the following data transform: when there is an isoform available in the GPI, use that as the...
This is a follow-on to #1984 Basically, all `goa_*` files, when they get to the end of the pipeline, should be exposed as the renamed `filtered_goa_*`. We currently have annotations/...
Update metadata and upstream resource sources for EcoCyc. Tagging @pgaudet
This replaces https://github.com/geneontology/go-site/issues/1779 After next release, switch to new provided metadata.