Tom Klein

Code organization: I suspect this may need some work, feel free to say so. Right now the import code is basically in two places: * code that returns a controller...

Some numbers from my desktop computer with 16G ram. Parsing: * a 100x100 matrix takes .1 sec * 200x200 takes .7 sec * 998x998 takes 69 seconds (nexus_parser fails consistently...

Remaining issues: * If the user chooses to match both otus and descriptors (rows and columns), then it's possible that we're affecting existing matrices with the same otu/descriptor pair but...

Thanks for the feedback [jlpereira](https://github.com/jlpereira)! > You can filter them on Smart Selector using filter prop Ah, thanks. This is filtered client side (right?) so it could return no recent...

> > duplicate name(s): '' detected for character 'Undefined' > > Can you describe what you are doing at the wrapper level for `?` cells? There should be no CharacterState...

That makes sense, so given the following as an example with a descriptor with no name and two character states with no names: ```ruby #"AN", :c=>"4", :a=>"JC", :dc=>"2008.4.13.20.31.50", :dm=>"2008.4.13.20.32.10", :id=>"01194a584b9f2",...

> The failing tests are on matrix codings of the form `(01)`. my only guess right now is that somehow those multi-codings are sometimes getting created in the wrong order,...

> > Are there other nexus extensions we should recognize here? .nexus (.tre?) > > Best to explore Mesquite documentation, if they can handle it then we should try to...

Updated to nexus_parser 1.2.2 - I was able to import 15 random morphobank nexus files (w/ no notes) without error - meaning the jobs succeeded and at a cursory glance...

Maybe another issue: on long descriptor names the ui gets pretty jumbled, though you can more or less read the names when they change to black on hover: ![Screenshot 2024-05-15...