Logolas

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Error installing and running Logolas

1

Hello, I'm having an issue getting Logolas to install through BioManager. I've run through the steps listed on the Github up until install_github("kkdey/Logolas",build_vignettes = TRUE) At that point, I get...

Daread

package ‘Logolas’ is not available for Bioconductor version '3.13'

1

Hi, Will you be updating Logolas for use with the newer bioconductor version? I really like this program!

ron-geller

Hi there, thanks for this excellent package I'm trying to provide a dataframe as input for the bg argument with the following call: `logomaker(selected, type = "EDLogo", bg = bg_freq)`...

gcambray

Ignoring 'N', '-', and '*' in logos

1

Is there a way to ignore certain characters or missing data when calculating EDLogos? Right now, any N in a DNA alignment shows up as a separate character in the...

shahpr

Excessive warnings produced without REBayes installed.

2

Hi, when using this package without REBayes installed, using `type = "EDLogo"` produces the warning "Due to absence of package REBayes, switching to EM algorithm." This warning is helpful, but...

Neato-Nick

Error in using examples

4

Hello, Firstly, thank you for your tool. It totally answers what I want to represent. So, I wanted to test it. But unfortunately, I can not run the sample datasets....

benjin44

Bug with the separating line in EDLogo

1

It seems that the separating line sometimes disappears in the positive or negative axis when the other axis is very strongly represented in the logo plot

kkdey

Test multipanel plots with Logolas and other base graphs and ggplot2 graphs

2

kkdey