Bruno P. Kinoshita

Log all variables in the compss log files

1

## Level **MINOR** ## Component **RUNTIME** ## Environment * COMPSs version * [3.2](https://github.com/eflows4hpc/workflow-registry/blob/9b232cf8aa9c6d285a662168eea4ae9fef73a74b/Pillar_II/esm/src/fesom2/env/mn4.sh#L7) * Java / Python / C version * Operating System ## Description This is related to #10....

Allow more variables to be replaced in the @mpi decorator

1

## Level **MINOR** ## Component **PYTHON BINDING* ## Environment * COMPSs version * [3.2](https://github.com/eflows4hpc/workflow-registry/blob/9b232cf8aa9c6d285a662168eea4ae9fef73a74b/Pillar_II/esm/src/fesom2/env/mn4.sh#L7) * Java / Python / C version * Operating System ## Description The `@mpi` decorator allows...

No start_daemon in the Docker cli?

4

## Level **MINOR** ## Component **PYTHON BINDING** https://github.com/bsc-wdc/compss/blob/172d245da563a63ee45de4b805100774866d92b0/builders/specs/cli/PyCOMPSsCLIResources/pycompss_cli/core/docker/cmd.py#L230 ## Environment * COMPSs version `3.3.2` * Java / Python / C version `python` * Operating System Linux Ubuntu LTS ```bash $...

--- name: Pull Request template about: Fix typo, use the `platform` module for OS detection title: '' labels: '' assignees: '' --- # Status **READY** # Description Hi, this PR...

--- name: Pull Request template about: Describe the changes of a Pull Request you want to merge. title: 'Create an installation group for optional deps' labels: '' assignees: '' ---...

Hi! Just a quick PR as I was looking for the `doc/` directory and the documentation sources, but couldn't locate in this repository. I believe it was moved to the...

Was reading the docs today while testing some WDL workflow, when I noticed a formatting that appeared to be incorrect. I think the `1. Step based:` is highlighted due to...

Missing .gitmodules?

2

Hi, I see `.gitmodules` was removed in [this commit](83a51c20d014184dfaac8694d4ce23e5bbb8a604), but the directories `janis-core` and `janis-assistant` were kept, as well as the `updatesubmodules.sh` script. Should these be removed as well? Cheers...

Several warnings when downloading data for Tutorial 1

1

When executing `wget` or `curl` with `wget -q -O- "https://github.com/PMCC-BioinformaticsCore/janis-workshops/raw/master/janis-data.tar" | tar -x` (removed the `z`, see #51 for more) the file is successfully downloaded and uncompressed. However, there are...

The `tools/alighment.py` file is first created in the [tutorial 1](https://janis.readthedocs.io/en/latest/tutorials/tutorial1.html). ```py # File: tools/alignment.py from janis_core import WorkflowBuilder, String from janis_bioinformatics.data_types import FastqGzPairedEnd, FastaWithDict from janis_bioinformatics.tools.bwa import BwaMemLatest from janis_bioinformatics.tools.samtools...