Doo Nam Kim

[Request] save tomotwin result files in float32

1

My napari can open my raw/tomotwin input tomogram (024_06_06_10p4_Apix_MED4_TS_14_SIRT_CTF_no_Au_rec.mrc) well as  However, when I opened my umap (2024_06_06_10p4_Apix_MED4_TS_14_SIRT_CTF_no_Au_rec_a10_embeddings.tumap) with my napari, I saw...

Needs help even to reproduce tutorial

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I installed TomoTwin with `pip install tomotwin-cryoet` Then embedding ``` TomoTwin_model="/home/kimd999/brave/DN/model/TomoTwin/model/tomotwin_latest_2024_Sep.pth" input_tomo="tomo/tomo.mrc" batch_size="256" # If you run into memory issues, reduce the batchsize (-b). CUDA_VISIBLE_DEVICES=0,1 tomotwin_embed.py tomogram -m $TomoTwin_model -v...

[Question] Can I install tomotwin without pip?

1

I think that 'pip install tomotwin-cryoet' has nothing to do with my current git cloned local git repo, since 'pip install tomotwin-cryoet' should just install with whatever TomoTwin author uploaded...

I git cloned aitom and install DISCA by [singularity](https://github.com/xulabs/aitom/tree/1d350b617664728847921ae4af4bed7c9b66ce1c/aitom/classify/deep/unsupervised/disca/install/singularity_tensorflow). However, I can't find document on how to run DISCA. [Old particle picking of aitom](https://github.com/xulabs/aitom/blob/master/doc/tutorials/008_particle_picking_tutorial.md) appears to be not DISCA.

[simple question] boltz2 ? boltz2-x?

1

It appears that starting a [6/6/2025 commit](https://github.com/jwohlwend/boltz/commit/afe4aa657e80bc2974c27b7095bc0ff1091d7150), the latest commit of https://github.com/jwohlwend/boltz uses boltz-2. I wonder whether the the latest commit of https://github.com/jwohlwend/boltz uses boltz-2 or boltz-2x (yes, obviously I...