pconpy
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kianho
a python module for generating protein contact maps and distance maps
Hello, i have two questions hope i get the answers from you 1- first the rule of the sequence alignment is that to extract a chunks of subsequences represents the...
The current --plaintext outputs the matrices as dense adjacency vectors. This format is needlessly verbose. Change the output format to graph-style edge tuples, such that tuples of non-contacts are not...
Rendering PDF plots of large proteins takes a long time. E.g. rendering 1mtp. ### possible solutions - is there matplotlib trick to make this more efficient? - issue a warning...
A standalone pconpy web-server would allow lab members to use pconpy without the need for the command-line. ## Possible solution This could be implemented in Flask.
For other users: 1. DSSP executable is not available in the provided ftp server. But I can get it using `conda install -c salilab dssp`, and the command is `mkdssp`...
