Keith Hughitt comments

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                                            Keith Hughitt

Create a reference dataset collection with representative examples of currently supported & planned data types

**Couple follow up thoughts..** Another benefit of having a reference dataset collection like this is that, for all of the "supported" datasets for which the repo contains a working data...

Create a reference dataset collection with representative examples of currently supported & planned data types

The main motivation is not so much to show what kinds of data Data Package supports (that's sort of a bonus side effect), but rather, the goal is to help...

Create a reference dataset collection with representative examples of currently supported & planned data types

Also, in the original issue description I mixed together two ideas that I think could be helpful to explicitly separate out: 1. **data "structure"** (e.g. table, image, audio, spec, etc.)...

Re-licensing rmarkdown as MIT

I agree.

Identical values reported for "var.nnz" and "var.n_measured_obs" for different datasets retrieved via get_anndata()

Apologies for the slow response! @ivirshup's explanation helps clear things up. Thanks for taking the time to respond, and for all of your work on cellxgene!

Use pdf checksums instead of file paths for indexing?

I'm thinking of the key in the index . I noticed the `settings.agent.index.use_absolute_paper_directory` option, but from the README and code (https://github.com/Future-House/paper-qa/blob/29135d0a37b3f4f61116642f1bcddf402da5d3ed/paperqa/settings.py#L405), it looks like it defaults to `False`, which is...