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bs3-align printing version only
Hi, I built the genome without any issues and am now trying to align some reads. Unfortunately, bs3-align is just printing the version and exiting. Is there a verbose option to see what is happening?
Here are my commands: bs3-build -f Mmul_8.0.1_chrom_only.fa --rrbs --cut-site=MspI
bs3-align -g Mmul_8.0.1_chrom_only.fa -1 LID_100316.R1.fq.gz -2 LID_100316.R2.fq.gz -m 0.08 -o $sample.bs3 --rrbs -c C-CGG
This 2nd command returns: BS-Seeker3 beta
Any idea what is going on?