bs3-align printing version only

[nsmackler]

Hi, I built the genome without any issues and am now trying to align some reads. Unfortunately, bs3-align is just printing the version and exiting. Is there a verbose option to see what is happening?

Here are my commands: bs3-build -f Mmul_8.0.1_chrom_only.fa --rrbs --cut-site=MspI

bs3-align -g Mmul_8.0.1_chrom_only.fa -1 LID_100316.R1.fq.gz -2 LID_100316.R2.fq.gz -m 0.08 -o $sample.bs3 --rrbs -c C-CGG

This 2nd command returns: BS-Seeker3 beta

Any idea what is going on?