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bs3-build error - std::bad_alloc ??

Open ghost opened this issue 4 years ago • 1 comments

Hi,

I am trying to index this genome: ftp://ftp.ensembl.org/pub/release-91/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz

I am using this command line: ./bs3-build -f /mnt/data/Genomes/hg38/Homo_sapiens.GRCh38.dna.primary_assembly.fa -s 20 -L 8

I get this error:

Bias computation: 6000000000 / 6199695936
Bias computation: 6100000000 / 6199695936
Computed bias table in 20s
Allocating memory for hash tables...terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc
Aborted (core dumped)
[Done] Last: 0:02:50.279478     Total: 0:04:45.361098
Build Whole genome preprocessing
--- 285.360810041 seconds ---

Also tried: s:25, L:5 --> error s:25, L:8 --> error

System specs: threads: 64 RAM: 728 Gb Any ideas of what could be wrong?

Thanks, Sol

ghost avatar Mar 03 '20 11:03 ghost