Hyunbin Kim

Please try `foldseek createdb` for foldcomp database and run foldseek on the generated foldseek database. Also, check that `v2023_02` is a partial update from initial release to 02/2023. If you...

I'm sorry for the inconsistency. This kind of thing would happen with only provided databases that I removed ".pdb" from .lookup files. The default behavior of foldcomp is saving extension...

Thank you for notification. I'll check this.

I'm sorry for making confusion. The solution of this is provided in #45.

Sorry for the late response. I've changed the default to use id/filename when extracting sequences in [412c7a8](https://github.com/steineggerlab/foldcomp/commit/412c7a8733c908a3bff599430a96ea8d01c0b077) and introduced `use-title` flag if title is needed.

I think you can write a script that iterate through nested sub-directories. ```sh #!/bin/bash # Usage: ./foldcomp_recursive.sh threads=$2 function run_command_in_dir { for dir in "$1"/*; do if [ -d "$dir"...

Thanks for the feedback. I'll implement a verbosity option for logging error with processed file name. As initial foldcomp was designed to handle predicted structures without discontinuity, we haven't checked...

Hi there, Thanks for your question! We actually checked those papers during development and currently our implementation of classical NeRF against pNeRF and mp-NeRF is just as fast as mp-NeRF...

I'm sorry there was a bug at assigning mode for database reading. Thank you for notifying this and please check if this is solved in the latest version.

Latest version of Foldcomp. Subsetting 'a_thaliana' should work with foldcomp of latest commit.