khanlab
anterior-posterior subdivisions option
Add a rule and CLI option for performing dynamic subdivision of the atlas into A-P subdivisions.
Values could be '1', 'hbt', 'uhbt' or '#' (any number), where hbt/uhbt will result in a custom subdivision based on applying the consensus HSG protocol on bigbrain (or any other templates/datasets that make sense).
Have some principled way to assigning numeric labels - then also need to create the corresponding LUT dynamically.
The text labels for each, for hbt/uhbt it's obvious - but for custom # of subdivisions.
One option, is we append _AP#of# (CA1_AP1of4, Sub_AP1of4) (todo: add in full example lut for clarity)
Labels that don't overlap with the coordinates (e.g. SRLM, Cyst) need to be excluded from this. Have a list of these to exclude, maybe in the atlas config section.
(Discussed in June 4 2024 Hippo Meeting)
@Bradley-Karat I recall you were working on this at some point but I forget what happened?
Ah ya I made some progress a while back and something else must've come up and I never got back around to it. It would be nice to add a simple UHBT or HBT scheme to v2.0, where the head, body, tail would have a volume.tsv and we can also add a HBT.label.gii surface so users can do additional ant-post analyses.
If you agree it would be good to have in v2.0 I can keep working at it.
