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add better support for conda

Open akhanf opened this issue 3 years ago • 2 comments

Currently we are using poetry for dependency management, but could be nice to also add direct support for conda (e.g. avoiding problems as in #168).

Could:

  • create a conda environment file for hippunfold as a whole (using conda packages where available)
  • add hippunfold to conda-forge

With conda-forge could perhaps even package binaries for the external dependencies.. Something to consider..

akhanf avatar Feb 10 '22 19:02 akhanf

Just wanted to bump this as discussed in our devs meeting

(June 4, 2024)

Nighres may be challenging but not too bad: https://github.com/nighres/nighres/issues/173

I'll try to play around with this too when i get the chance :)

jordandekraker avatar Jun 04 '24 16:06 jordandekraker

Great!

I have a basic set of recipes in order to get the snakebids conda package built, just need to revisit it: https://github.com/akhanf/conda-snakebids-builds

And it looks like all our other dependencies are in conda packages already (though may need to confirm versions): https://anaconda.org/conda-forge/niftyreg https://anaconda.org/aramislab/ants https://anaconda.org/conda-forge/convert3d https://anaconda.org/conda-forge/imagemagick https://anaconda.org/bioconda/connectome-workbench

akhanf avatar Jun 04 '24 17:06 akhanf