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VCF Parsing Issue
I'm running some BCFTools operations on the VCF outputs of the Kevlar pipeline (from simlike).
It's a small issue, but the VCF syntax stumbles on the INFO lines:
##INFO=<ID=IKMERS,Number=1,Type=Integer,Description="number of "interesting" (novel) k-mers spanning the variant alternate allele">
This is because there are quotes around "interesting", and it makes it so that this line cannot be parsed.
It is also missing the INFO fields for CALLCLASS and PART.