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VCF Parsing Issue

Open 17tranap opened this issue 4 years ago • 1 comments

I'm running some BCFTools operations on the VCF outputs of the Kevlar pipeline (from simlike).

It's a small issue, but the VCF syntax stumbles on the INFO lines:

##INFO=<ID=IKMERS,Number=1,Type=Integer,Description="number of "interesting" (novel) k-mers spanning the variant alternate allele">

This is because there are quotes around "interesting", and it makes it so that this line cannot be parsed.

It is also missing the INFO fields for CALLCLASS and PART.

17tranap avatar Jun 24 '20 21:06 17tranap