caffe-augmentation
caffe-augmentation copied to clipboard
Published
20 hours ago •
kevinlin311tw
kevinlin311tw
build issues - ubuntu
Is there a "golden system" requirement for this library? I'm having unexpected build problems as detailed in the log below.
(caffe) toby@w8pc:~/caffe-augmentation$ CXXFLAGS=-std=c++11 CPPFLAGS=-std=c++11 cmake .
-- The C compiler identification is GNU 5.4.1
-- The CXX compiler identification is GNU 5.4.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- system
-- thread
-- chrono
-- date_time
-- atomic
-- Found GFlags: /usr/include
-- Found gflags (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libgflags.so)
-- Found Glog: /usr/include
-- Found glog (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libglog.so)
CMake Warning at /usr/share/cmake-3.9/Modules/FindProtobuf.cmake:429 (message):
Protobuf compiler version 3.6.1 doesn't match library version 3.0.0
Call Stack (most recent call first):
cmake/ProtoBuf.cmake:4 (find_package)
cmake/Dependencies.cmake:24 (include)
CMakeLists.txt:28 (include)
-- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread (found version "3.0.0")
-- Found PROTOBUF Compiler: /home/toby/miniconda3/envs/caffe/bin/protoc
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- HDF5: Using hdf5 compiler wrapper to determine CXX configuration
-- Found HDF5: /home/toby/miniconda3/envs/caffe/lib/libhdf5_cpp.so;/home/toby/miniconda3/envs/caffe/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/toby/miniconda3/envs/caffe/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.2") found components: HL
-- Found LMDB: /usr/include
-- Found lmdb (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/liblmdb.so)
-- Found LevelDB: /usr/include
-- Found LevelDB (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libleveldb.so)
-- Found Snappy: /usr/include
-- Found Snappy (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libsnappy.so)
-- CUDA detected: 8.0
-- Found cuDNN (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libcudnn.so)
-- Added CUDA NVCC flags for: sm_61
-- OpenCV found (/home/toby/miniconda3/envs/caffe/share/OpenCV)
-- Found Atlas: /usr/include/x86_64-linux-gnu
-- Found Atlas (include: /usr/include/x86_64-linux-gnu, library: /usr/lib/x86_64-linux-gnu/libatlas.so)
-- Found PythonInterp: /usr/bin/python2.7 (found suitable version "2.7.14", minimum required is "2.7")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found suitable version "2.7.14", minimum required is "2.7")
-- Found NumPy: /usr/local/lib/python2.7/dist-packages/numpy/core/include (found suitable version "1.14.1", minimum required is "1.7.1")
-- NumPy ver. 1.14.1 found (include: /usr/local/lib/python2.7/dist-packages/numpy/core/include)
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- python
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found Git: /usr/bin/git (found version "2.14.1")
--
-- ******************* Caffe Configuration Summary *******************
-- General:
-- Version : <TODO> (Caffe doesn't declare its version in headers)
-- Git : ca5b3c1-dirty
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- Release CXX flags : -O3 -DNDEBUG -std=c++11 -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Debug CXX flags : -g -std=c++11 -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Build type : Release
--
-- BUILD_SHARED_LIBS : ON
-- BUILD_python : ON
-- BUILD_matlab : OFF
-- BUILD_docs : ON
-- CPU_ONLY : OFF
--
-- Dependencies:
-- BLAS : Yes (Atlas)
-- Boost : Yes (ver. 1.62)
-- glog : Yes
-- gflags : Yes
-- protobuf : Yes (ver. 3.0.0)
-- lmdb : Yes (ver. 0.9.21)
-- Snappy : Yes (ver. ..)
-- LevelDB : Yes (ver. 1.20)
-- OpenCV : Yes (ver. 3.4.2)
-- CUDA : Yes (ver. 8.0)
--
-- NVIDIA CUDA:
-- Target GPU(s) : Auto
-- GPU arch(s) : sm_61
-- cuDNN : Yes
--
-- Python:
-- Interpreter : /usr/bin/python2.7 (ver. 2.7.14)
-- Libraries : /usr/lib/x86_64-linux-gnu/libpython2.7.so (ver 2.7.14)
-- NumPy : /usr/local/lib/python2.7/dist-packages/numpy/core/include (ver 1.14.1)
--
-- Documentaion:
-- Doxygen : No
-- config_file :
--
-- Install:
-- Install path : /home/toby/caffe-augmentation/install
--
-- Configuring done
CMake Warning at src/caffe/CMakeLists.txt:20 (add_library):
Cannot generate a safe runtime search path for target caffe because files
in some directories may conflict with libraries in implicit directories:
runtime library [libglog.so.0] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/toby/miniconda3/envs/caffe/lib
runtime library [libgflags.so.2.2] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/toby/miniconda3/envs/caffe/lib
runtime library [libleveldb.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/toby/miniconda3/envs/caffe/lib
runtime library [libsnappy.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/toby/miniconda3/envs/caffe/lib
runtime library [libcudnn.so.7] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/toby/miniconda3/envs/caffe/lib
Some of these libraries may not be found correctly.
...many repetitions of the above snipped...
-- Generating done
-- Build files have been written to: /home/toby/caffe-augmentation
(caffe) toby@w8pc:~/caffe-augmentation$ make -j4 all
[ 0%] Building CXX object src/caffe/CMakeFiles/proto.dir/__/__/include/caffe/proto/caffe.pb.cc.o
[ 1%] Linking CXX static library ../../lib/libproto.a
[ 2%] Built target proto
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_absval_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_concat_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_bnll_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_base_data_layer.cu.o
/home/toby/miniconda3/envs/caffe/include/gflags/gflags.h(226): warning: attribute "visibility" does not apply here
/home/toby/miniconda3/envs/caffe/include/gflags/gflags.h(226): warning: attribute "visibility" does not apply here
/home/toby/miniconda3/envs/caffe/include/gflags/gflags.h(226): warning: attribute "visibility" does not apply here
/home/toby/miniconda3/envs/caffe/include/gflags/gflags.h(226): warning: attribute "visibility" does not apply here
/home/toby/caffe-augmentation/include/caffe/common.hpp(80): error: namespace "std" has no member "isnan"
/home/toby/caffe-augmentation/include/caffe/common.hpp(81): error: namespace "std" has no member "isinf"
/home/toby/caffe-augmentation/include/caffe/common.hpp(80): error: namespace "std" has no member "isnan"
/home/toby/caffe-augmentation/include/caffe/common.hpp(81): error: namespace "std" has no member "isinf"
2 errors detected in the compilation of "/tmp/tmpxft_00005e6f_00000000-7_absval_layer.cpp1.ii".
/home/toby/caffe-augmentation/include/caffe/common.hpp(80): error: namespace "std" has no member "isnan"
/home/toby/caffe-augmentation/include/caffe/common.hpp(81): error: namespace "std" has no member "isinf"
CMake Error at cuda_compile_1_generated_absval_layer.cu.o.Release.cmake:282 (message):
Error generating file
/home/toby/caffe-augmentation/src/caffe/CMakeFiles/cuda_compile_1.dir/layers/./cuda_compile_1_generated_absval_layer.cu.o
src/caffe/CMakeFiles/caffe.dir/build.make:63: recipe for target 'src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_absval_layer.cu.o' failed
make[2]: *** [src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_absval_layer.cu.o] Error 1
make[2]: *** Waiting for unfinished jobs....
/home/toby/caffe-augmentation/include/caffe/common.hpp(80): error: namespace "std" has no member "isnan"
/home/toby/caffe-augmentation/include/caffe/common.hpp(81): error: namespace "std" has no member "isinf"
2 errors detected in the compilation of "/tmp/tmpxft_00005e62_00000000-7_concat_layer.cpp1.ii".
CMake Error at cuda_compile_1_generated_concat_layer.cu.o.Release.cmake:282 (message):
Error generating file
/home/toby/caffe-augmentation/src/caffe/CMakeFiles/cuda_compile_1.dir/layers/./cuda_compile_1_generated_concat_layer.cu.o
src/caffe/CMakeFiles/caffe.dir/build.make:84: recipe for target 'src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_concat_layer.cu.o' failed
make[2]: *** [src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_concat_layer.cu.o] Error 1
2 errors detected in the compilation of "/tmp/tmpxft_00005e63_00000000-7_bnll_layer.cpp1.ii".
CMake Error at cuda_compile_1_generated_bnll_layer.cu.o.Release.cmake:282 (message):
Error generating file
/home/toby/caffe-augmentation/src/caffe/CMakeFiles/cuda_compile_1.dir/layers/./cuda_compile_1_generated_bnll_layer.cu.o
src/caffe/CMakeFiles/caffe.dir/build.make:77: recipe for target 'src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_bnll_layer.cu.o' failed
make[2]: *** [src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_bnll_layer.cu.o] Error 1
2 errors detected in the compilation of "/tmp/tmpxft_00005e76_00000000-7_base_data_layer.cpp1.ii".
CMake Error at cuda_compile_1_generated_base_data_layer.cu.o.Release.cmake:282 (message):
Error generating file
/home/toby/caffe-augmentation/src/caffe/CMakeFiles/cuda_compile_1.dir/layers/./cuda_compile_1_generated_base_data_layer.cu.o
src/caffe/CMakeFiles/caffe.dir/build.make:70: recipe for target 'src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_base_data_layer.cu.o' failed
make[2]: *** [src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_base_data_layer.cu.o] Error 1
CMakeFiles/Makefile2:235: recipe for target 'src/caffe/CMakeFiles/caffe.dir/all' failed
make[1]: *** [src/caffe/CMakeFiles/caffe.dir/all] Error 2
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2
