Kevin Kovalchik
Kevin Kovalchik
Dear Pan, My apologies for taking so long on this. I wanted to let you know I haven't forgotten about it. I'll be testing some functions this week, so if...
Hi Anne! Are you just interested in the parse/quant output? Or do you use the QC part of it as well? We could probably add CV to the parse/quant output...
As I recall, RawSplit made MGF files out of raw files that had both positive and negative ionization polarity. But that was a while ago, so perhaps it was CV....
Okay, so I think there are two things: 1. Somehow split up the analysis in RawTools so it handles multiple CVs. Possibly we can filter the scans we extract by...
I believe the group at PNNL has a .NET tool for working with mzML files. If I recall correctly, it reads fine but they said there might be an issue...
Sounds good. I'm going to look through the ThermoRawFileParser code base. Since it already converts MGF files to mzML files, possibly we can make a version that splits it into...
I mean it converts RAW files into mzML files.... not MGF into mzML
That is something I have thought about for a while. I agree it would be nice to allow for mzML files. In principle, writing something that loads mzML files into...
Ah, well, never mind about that. :) But still, what is your timeline? I will see if I can do some work on this in my free time, but it's...
I'm not very familiar with maxquant.live. Is it actually controlling the file creation in some way? The "orphan scans" up at the top look pretty funky. Does it just go...