PCAtools

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Dear PCAtools developer, thanks for maintaining this tool. I tried to assign a continuous variable to augment `colby` in function `biplot`, however, it looks like the color legend is discretized....

wbvguo

Error with the pca function

3

Hello, I get the error next when using the pca function: ``` > PCAtools::pca(rlog, coldata, removeVar = 0.1) Erreur : useNames = NA is defunct. Instead, specify either useNames =...

Pierre9344

Hi, I'm trying to use the eigencorplot function and this error appeared: Error in if (abs(max) > abs(min)) { : missing value where TRUE/FALSE needed. Is there something I can...

AnjaliS1

https://github.com/kevinblighe/PCAtools/blob/50f240ba76fe07e2a546998e76dc8aa1c3570693/R/pca.R#L101

elifozcelik

Looking at the `pca()` code I noticed that the function does not have a `BPPARAM` parameter as it happens to have the `BiocSingular::runSVD()` function and that allows usage of multi-core...

trinetra75

The plots are very beautiful ! Wondering if you a example of how to do these plots on voom-limma normalized data ?

Krithika-Bhuvan

First of all, I'm sorry if this question makes no sense for this package. I am back to studying PCA, and I have a lot of (potentially disconnected) information in...

luizalmeida93

Hi Kevin, I am using the latest version of PCAtools in R 4.2.2. I want to know how to solve this error. this is my code >dds dds vst p...

jawi005

Hi Kevin, I am using the latest version of PCAtools in R 4.2.2. I want to know how to solve this error. **First of all, my code：** data(iris) library(PCAtools) res

renliang1996

Dear Kevin, is there a way to change the text color of the labels (lab)? I have a dark and colorful plot where the black textlabels are badly visible. The...

SebastianHesse