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kevin218
[Bug]: Issue updating Eureka with conda?
FAQ check
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Instrument
NIRSpec (Stages 1-3)
What happened?
Stage 1 runs, but produces no output. It appears that it reads the value of 'CALCULATED_TRACK_TR_202111' for the pointing quality from the data, but that's not in the dict.
Error traceback output
(eureka) minmei:TRAPPIST-1c-Eureka dlong$ python run_eureka.py
Starting Stage 1 Processing Input directory: /Users/dlong/Data/02420/ Output directory: /Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/ Copying S1 control file
Found 8 data file(s) ending in uncal.fits Starting file 1 of 8: jw02420001001_02101_00001-seg001_nrs1_uncal.fits 2022-07-15 09:33:46,142 - stpipe.EurekaS1Pipeline - INFO - EurekaS1Pipeline instance created. 2022-07-15 09:33:46,143 - stpipe.EurekaS1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2022-07-15 09:33:46,144 - stpipe.EurekaS1Pipeline.dq_init - INFO - DQInitStep instance created. 2022-07-15 09:33:46,144 - stpipe.EurekaS1Pipeline.saturation - INFO - SaturationStep instance created. 2022-07-15 09:33:46,145 - stpipe.EurekaS1Pipeline.ipc - INFO - IPCStep instance created. 2022-07-15 09:33:46,146 - stpipe.EurekaS1Pipeline.superbias - INFO - SuperBiasStep instance created. 2022-07-15 09:33:46,147 - stpipe.EurekaS1Pipeline.refpix - INFO - RefPixStep instance created. 2022-07-15 09:33:46,148 - stpipe.EurekaS1Pipeline.rscd - INFO - RscdStep instance created. 2022-07-15 09:33:46,149 - stpipe.EurekaS1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2022-07-15 09:33:46,150 - stpipe.EurekaS1Pipeline.lastframe - INFO - LastFrameStep instance created. 2022-07-15 09:33:46,151 - stpipe.EurekaS1Pipeline.linearity - INFO - LinearityStep instance created. 2022-07-15 09:33:46,152 - stpipe.EurekaS1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2022-07-15 09:33:46,153 - stpipe.EurekaS1Pipeline.reset - INFO - ResetStep instance created. 2022-07-15 09:33:46,154 - stpipe.EurekaS1Pipeline.persistence - INFO - PersistenceStep instance created. 2022-07-15 09:33:46,156 - stpipe.EurekaS1Pipeline.jump - INFO - JumpStep instance created. 2022-07-15 09:33:46,157 - stpipe.EurekaS1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2022-07-15 09:33:46,159 - stpipe.EurekaS1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2022-07-15 09:33:46,163 - stpipe.Eureka_RampFitStep - INFO - Eureka_RampFitStep instance created. 2022-07-15 09:33:46,233 - stpipe.EurekaS1Pipeline - INFO - Step EurekaS1Pipeline running with args ('/Users/dlong/Data/02420/jw02420001001_02101_00001-seg001_nrs1_uncal.fits',). 2022-07-15 09:33:46,249 - stpipe.EurekaS1Pipeline - INFO - Step EurekaS1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'all'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}} 2022-07-15 09:33:47,355 - stpipe.EurekaS1Pipeline - WARNING - /Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating meta.visit.engdb_pointing_quality the following error occurred: 'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']
Failed validating 'enum' in schema: OrderedDict([('title', 'Quality of pointing information from EngDB'), ('type', 'string'), ('enum', ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']), ('fits_keyword', 'ENGQLPTG'), ('blend_table', True)])
On instance: 'CALCULATED_TRACK_TR_202111' warnings.warn(errmsg, ValidationWarning)
2022-07-15 09:33:47,504 - stpipe.EurekaS1Pipeline - INFO - Prefetching reference files for dataset: 'jw02420001001_02101_00001-seg001_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias'] 2022-07-15 09:33:49,023 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_wavelengthrange_0019.rmap 1.4 K bytes (1 / 43 files) (0 / 197.1 K bytes) 2022-07-15 09:33:49,115 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ote_0022.rmap 1.3 K bytes (2 / 43 files) (1.4 K / 197.1 K bytes) 2022-07-15 09:33:49,203 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_msaoper_0006.rmap 1.0 K bytes (3 / 43 files) (2.7 K / 197.1 K bytes) 2022-07-15 09:33:49,283 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_msa_0020.rmap 1.3 K bytes (4 / 43 files) (3.7 K / 197.1 K bytes) 2022-07-15 09:33:49,372 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ifuslicer_0011.rmap 1.4 K bytes (5 / 43 files) (5.0 K / 197.1 K bytes) 2022-07-15 09:33:49,459 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ifupost_0013.rmap 1.4 K bytes (6 / 43 files) (6.4 K / 197.1 K bytes) 2022-07-15 09:33:49,548 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ifufore_0011.rmap 1.4 K bytes (7 / 43 files) (7.8 K / 197.1 K bytes) 2022-07-15 09:33:49,638 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_fpa_0021.rmap 1.3 K bytes (8 / 43 files) (9.1 K / 197.1 K bytes) 2022-07-15 09:33:49,726 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_fore_0019.rmap 5.1 K bytes (9 / 43 files) (10.4 K / 197.1 K bytes) 2022-07-15 09:33:49,810 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_disperser_0021.rmap 6.0 K bytes (10 / 43 files) (15.5 K / 197.1 K bytes) 2022-07-15 09:33:49,897 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_dark_0041.rmap 24.9 K bytes (11 / 43 files) (21.6 K / 197.1 K bytes) 2022-07-15 09:33:50,008 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_collimator_0019.rmap 1.4 K bytes (12 / 43 files) (46.5 K / 197.1 K bytes) 2022-07-15 09:33:50,091 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_camera_0019.rmap 1.3 K bytes (13 / 43 files) (47.9 K / 197.1 K bytes) 2022-07-15 09:33:50,176 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_0261.imap 5.1 K bytes (14 / 43 files) (49.2 K / 197.1 K bytes) 2022-07-15 09:33:50,261 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_wfssbkg_0007.rmap 3.1 K bytes (15 / 43 files) (54.3 K / 197.1 K bytes) 2022-07-15 09:33:50,346 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_wavemap_0008.rmap 2.2 K bytes (16 / 43 files) (57.4 K / 197.1 K bytes) 2022-07-15 09:33:50,423 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_spectrace_0008.rmap 2.3 K bytes (17 / 43 files) (59.6 K / 197.1 K bytes) 2022-07-15 09:33:50,507 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_specprofile_0008.rmap 2.4 K bytes (18 / 43 files) (62.0 K / 197.1 K bytes) 2022-07-15 09:33:50,594 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_photom_0028.rmap 1.2 K bytes (19 / 43 files) (64.3 K / 197.1 K bytes) 2022-07-15 09:33:50,676 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_pars-tweakregstep_0005.rmap 3.1 K bytes (20 / 43 files) (65.6 K / 197.1 K bytes) 2022-07-15 09:33:50,769 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_dark_0031.rmap 6.8 K bytes (21 / 43 files) (68.7 K / 197.1 K bytes) 2022-07-15 09:33:50,854 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_0190.imap 5.1 K bytes (22 / 43 files) (75.5 K / 197.1 K bytes) 2022-07-15 09:33:50,955 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_superbias_0008.rmap 8.9 K bytes (23 / 43 files) (80.6 K / 197.1 K bytes) 2022-07-15 09:33:51,044 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_readnoise_0014.rmap 17.2 K bytes (24 / 43 files) (89.5 K / 197.1 K bytes) 2022-07-15 09:33:51,154 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_filteroffset_0004.rmap 1.4 K bytes (25 / 43 files) (106.7 K / 197.1 K bytes) 2022-07-15 09:33:51,240 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_distortion_0028.rmap 22.6 K bytes (26 / 43 files) (108.1 K / 197.1 K bytes) 2022-07-15 09:33:51,340 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_0214.imap 5.0 K bytes (27 / 43 files) (130.8 K / 197.1 K bytes) 2022-07-15 09:33:51,432 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_specwcs_0031.rmap 5.5 K bytes (28 / 43 files) (135.8 K / 197.1 K bytes) 2022-07-15 09:33:51,518 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_reset_0022.rmap 4.2 K bytes (29 / 43 files) (141.3 K / 197.1 K bytes) 2022-07-15 09:33:51,601 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_photom_0036.rmap 3.9 K bytes (30 / 43 files) (145.5 K / 197.1 K bytes) 2022-07-15 09:33:51,694 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-spec3pipeline_0003.rmap 816 bytes (31 / 43 files) (149.4 K / 197.1 K bytes) 2022-07-15 09:33:51,779 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-spec2pipeline_0007.rmap 1.1 K bytes (32 / 43 files) (150.2 K / 197.1 K bytes) 2022-07-15 09:33:51,864 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-outlierdetectionstep_0012.rmap 3.4 K bytes (33 / 43 files) (151.3 K / 197.1 K bytes) 2022-07-15 09:33:51,951 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-detector1pipeline_0004.rmap 1.1 K bytes (34 / 43 files) (154.7 K / 197.1 K bytes) 2022-07-15 09:33:52,037 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_flat_0059.rmap 15.4 K bytes (35 / 43 files) (155.8 K / 197.1 K bytes) 2022-07-15 09:33:52,136 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_extract1d_0017.rmap 1.3 K bytes (36 / 43 files) (171.2 K / 197.1 K bytes) 2022-07-15 09:33:52,220 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_dark_0026.rmap 5.1 K bytes (37 / 43 files) (172.5 K / 197.1 K bytes) 2022-07-15 09:33:52,307 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_cubepar_0012.rmap 800 bytes (38 / 43 files) (177.5 K / 197.1 K bytes) 2022-07-15 09:33:52,389 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_apcorr_0009.rmap 4.3 K bytes (39 / 43 files) (178.3 K / 197.1 K bytes) 2022-07-15 09:33:52,476 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_miri_0301.imap 5.2 K bytes (40 / 43 files) (182.6 K / 197.1 K bytes) 2022-07-15 09:33:52,560 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_fgs_apcorr_0003.rmap 4.1 K bytes (41 / 43 files) (187.8 K / 197.1 K bytes) 2022-07-15 09:33:52,642 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_fgs_0103.imap 4.6 K bytes (42 / 43 files) (191.9 K / 197.1 K bytes) 2022-07-15 09:33:52,732 - CRDS - INFO - Fetching /Users/dlong/crds_cache/mappings/jwst/jwst_0927.pmap 580 bytes (43 / 43 files) (196.5 K / 197.1 K bytes) 2022-07-15 09:33:53,492 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0048.fits 135.4 K bytes (1 / 7 files) (0 / 44.6 M bytes) 2022-07-15 09:33:53,691 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits 2.1 M bytes (2 / 7 files) (135.4 K / 44.6 M bytes) 2022-07-15 09:33:54,324 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits 14.9 M bytes (3 / 7 files) (2.2 M / 44.6 M bytes) 2022-07-15 09:33:55,900 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0029.fits 16.8 M bytes (4 / 7 files) (17.2 M / 44.6 M bytes) 2022-07-15 09:33:57,317 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits 4.2 M bytes (5 / 7 files) (34.0 M / 44.6 M bytes) 2022-07-15 09:33:57,926 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0024.fits 6.4 M bytes (6 / 7 files) (38.2 M / 44.6 M bytes) 2022-07-15 09:33:59,031 - CRDS - INFO - Fetching /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0071.fits 54.7 K bytes (7 / 7 files) (44.6 M / 44.6 M bytes) 2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for DARK reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0048.fits'. 2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for GAIN reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits'. 2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for LINEARITY reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits'. 2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for MASK reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0029.fits'. 2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for READNOISE reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits'. 2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'. 2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for SATURATION reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0024.fits'. 2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0071.fits'. 2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Starting calwebb_detector1 ... 2022-07-15 09:33:59,604 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:33:59,605 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'} 2022-07-15 09:33:59,668 - stpipe.EurekaS1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2022-07-15 09:33:59,668 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step will be skipped 2022-07-15 09:33:59,670 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale done 2022-07-15 09:33:59,755 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:33:59,756 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'} 2022-07-15 09:33:59,793 - stpipe.EurekaS1Pipeline.dq_init - INFO - Using MASK reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0029.fits 2022-07-15 09:34:00,015 - stpipe.EurekaS1Pipeline.dq_init - INFO - Extracting mask subarray to match science data 2022-07-15 09:34:00,028 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init done 2022-07-15 09:34:00,128 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:00,129 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'} 2022-07-15 09:34:00,168 - stpipe.EurekaS1Pipeline.saturation - INFO - Using SATURATION reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0024.fits 2022-07-15 09:34:00,258 - stpipe.EurekaS1Pipeline.saturation - INFO - Extracting reference file subarray to match science data 2022-07-15 09:34:00,268 - stpipe.EurekaS1Pipeline.saturation - INFO - Detected 0 saturated pixels 2022-07-15 09:34:00,268 - stpipe.EurekaS1Pipeline.saturation - INFO - Detected 0 A/D floor pixels 2022-07-15 09:34:00,274 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation done 2022-07-15 09:34:00,362 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:00,363 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'} 2022-07-15 09:34:00,363 - stpipe.EurekaS1Pipeline.ipc - INFO - Step skipped. 2022-07-15 09:34:00,366 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc done 2022-07-15 09:34:00,455 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:00,457 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'} 2022-07-15 09:34:00,495 - stpipe.EurekaS1Pipeline.superbias - INFO - Using SUPERBIAS reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0071.fits 2022-07-15 09:34:00,615 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias done 2022-07-15 09:34:00,707 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:00,708 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2022-07-15 09:34:00,726 - stpipe.EurekaS1Pipeline.refpix - INFO - use_side_ref_pixels = True 2022-07-15 09:34:00,726 - stpipe.EurekaS1Pipeline.refpix - INFO - odd_even_columns = True 2022-07-15 09:34:00,727 - stpipe.EurekaS1Pipeline.refpix - INFO - side_smoothing_length = 11 2022-07-15 09:34:00,727 - stpipe.EurekaS1Pipeline.refpix - INFO - side_gain = 1.000000 2022-07-15 09:34:00,727 - stpipe.EurekaS1Pipeline.refpix - INFO - odd_even_rows = True 2022-07-15 09:34:00,815 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix done 2022-07-15 09:34:00,914 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:00,915 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'} 2022-07-15 09:34:00,954 - stpipe.EurekaS1Pipeline.linearity - INFO - Using Linearity reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits 2022-07-15 09:34:01,011 - stpipe.EurekaS1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2022-07-15 09:34:01,050 - stpipe.EurekaS1Pipeline.linearity - INFO - Extracting linearity subarray to match science data 2022-07-15 09:34:01,076 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity done 2022-07-15 09:34:01,170 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:01,171 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420', 'dark_output': None} 2022-07-15 09:34:01,209 - stpipe.EurekaS1Pipeline.dark_current - INFO - Using DARK reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0048.fits 2022-07-15 09:34:01,269 - stpipe.EurekaS1Pipeline.dark_current - INFO - Science data nints=1, ngroups=3, nframes=1, groupgap=0 2022-07-15 09:34:01,269 - stpipe.EurekaS1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=12, nframes=1, groupgap=0 2022-07-15 09:34:01,307 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current done 2022-07-15 09:34:01,392 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:01,394 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} 2022-07-15 09:34:01,411 - stpipe.EurekaS1Pipeline.jump - INFO - CR rejection threshold = 4 sigma 2022-07-15 09:34:01,431 - stpipe.EurekaS1Pipeline.jump - INFO - Using GAIN reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits 2022-07-15 09:34:01,483 - stpipe.EurekaS1Pipeline.jump - INFO - Using READNOISE reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits 2022-07-15 09:34:01,519 - stpipe.EurekaS1Pipeline.jump - INFO - Using 1 core for jump detection 2022-07-15 09:34:01,555 - stpipe.EurekaS1Pipeline.jump - INFO - Extracting gain subarray to match science data 2022-07-15 09:34:01,555 - stpipe.EurekaS1Pipeline.jump - INFO - Extracting readnoise subarray to match science data 2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - Executing two-point difference method 2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - Working on integration 1: 2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - From highest outlier Two-point found 0 pixels with at least one CR and at least four groups 2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - From highest outlier Two-point found 0 pixels with at least one CR and three groups 2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - From highest outlier Two-point found 1013 pixels with at least one CR and two groups 2022-07-15 09:34:01,572 - stpipe.EurekaS1Pipeline.jump - INFO - Total elapsed time = 0.0163109 sec 2022-07-15 09:34:01,574 - stpipe.EurekaS1Pipeline.jump - INFO - The execution time in seconds: 0.163392 2022-07-15 09:34:01,579 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump done 2022-07-15 09:34:01,665 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,). 2022-07-15 09:34:01,666 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'all'} 2022-07-15 09:34:01,721 - stpipe.Eureka_RampFitStep - INFO - Using READNOISE reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits 2022-07-15 09:34:01,721 - stpipe.Eureka_RampFitStep - INFO - Using GAIN reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits 2022-07-15 09:34:01,783 - stpipe.Eureka_RampFitStep - INFO - Extracting gain subarray to match science data 2022-07-15 09:34:01,783 - stpipe.Eureka_RampFitStep - INFO - Extracting readnoise subarray to match science data 2022-07-15 09:34:01,784 - stpipe.Eureka_RampFitStep - INFO - Using algorithm = default 2022-07-15 09:34:01,784 - stpipe.Eureka_RampFitStep - INFO - Using weighting = default 2022-07-15 09:34:01,787 - stpipe.Eureka_RampFitStep - INFO - Number of processors used for multiprocessing: 16 2022-07-15 09:34:08,364 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,364 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,364 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,364 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,364 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,364 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,365 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,365 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,365 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,365 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,367 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,367 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,367 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,367 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,367 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,368 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,368 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,368 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,369 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,369 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,369 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,369 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:08,369 - stpipe - INFO - Number of groups per integration: 3 2022-07-15 09:34:08,369 - stpipe - INFO - Number of integrations: 1 2022-07-15 09:34:10,161 - stpipe.Eureka_RampFitStep - WARNING - /Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating <ImageModel(32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits> the following error occurred: 'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']
Failed validating 'enum' in schema['properties']['meta']['properties']['visit']['properties']['engdb_pointing_quality']: OrderedDict([('title', 'Quality of pointing information from EngDB'), ('type', 'string'), ('enum', ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']), ('fits_keyword', 'ENGQLPTG'), ('blend_table', True)])
On instance['meta']['visit']['engdb_pointing_quality']: 'CALCULATED_TRACK_TR_202111' warnings.warn(errmsg, ValidationWarning)
2022-07-15 09:34:10,203 - stpipe.Eureka_RampFitStep - WARNING - /Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating <CubeModel(1, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits> the following error occurred: 'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']
Failed validating 'enum' in schema['properties']['meta']['properties']['visit']['properties']['engdb_pointing_quality']: OrderedDict([('title', 'Quality of pointing information from EngDB'), ('type', 'string'), ('enum', ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']), ('fits_keyword', 'ENGQLPTG'), ('blend_table', True)])
On instance['meta']['visit']['engdb_pointing_quality']: 'CALCULATED_TRACK_TR_202111' warnings.warn(errmsg, ValidationWarning)
2022-07-15 09:34:10,218 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep done
2022-07-15 09:34:10,325 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:10,326 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:10,366 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Rescaling by 1.95
2022-07-15 09:34:10,374 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale done
2022-07-15 09:34:10,459 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:10,460 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:10,507 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Rescaling by 1.95
2022-07-15 09:34:10,515 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale done
Traceback (most recent call last):
File "/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/run_eureka.py", line 22, in
Failed validating 'enum' in schema['properties']['meta']['properties']['visit']['properties']['engdb_pointing_quality']: OrderedDict([('title', 'Quality of pointing information from EngDB'), ('type', 'string'), ('enum', ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']), ('fits_keyword', 'ENGQLPTG'), ('blend_table', True)])
On instance['meta']['visit']['engdb_pointing_quality']: 'CALCULATED_TRACK_TR_202111' (eureka) minmei:TRAPPIST-1c-Eureka dlong$ /Users/dlong/miniconda3/envs/eureka/lib/python3.9/multiprocessing/resource_tracker.py:216: UserWarning: resource_tracker: There appear to be 32 leaked semaphore objects to clean up at shutdown warnings.warn('resource_tracker: There appear to be %d '
What operating system are you using?
MacOS Catalina 10.15.7
What version of Python are you running?
Python 3.9.7
What Python packages do you have installed?
packages in environment at /Users/dlong/miniconda3/envs/eureka:
Name Version Build Channel
alabaster 0.7.12 pypi_0 pypi
appnope 0.1.3 pypi_0 pypi
asdf 2.10.1 pypi_0 pypi
asdf-astropy 0.2.1 pypi_0 pypi
asdf-coordinates-schemas 0.1.0 pypi_0 pypi
asdf-standard 1.0.2 pypi_0 pypi
asdf-transform-schemas 0.2.2 pypi_0 pypi
asdf-wcs-schemas 0.1.1 pypi_0 pypi
asteval 0.9.27 pypi_0 pypi
astraeus 0.2 pypi_0 pypi
astropy 5.1 pypi_0 pypi
astropy-healpix 0.6 pypi_0 pypi
astroquery 0.4.6 pypi_0 pypi
astroscrappy 1.1.0 pypi_0 pypi
asttokens 2.0.5 pypi_0 pypi
attrs 21.4.0 pypi_0 pypi
babel 2.10.3 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
batman-package 2.4.9 pypi_0 pypi
beautifulsoup4 4.11.1 pypi_0 pypi
bokeh 2.4.3 pypi_0 pypi
bottleneck 1.3.4 pypi_0 pypi
ca-certificates 2022.4.26 hecd8cb5_0
ccdproc 2.3.1 pypi_0 pypi
celerite 0.4.2 pypi_0 pypi
certifi 2022.6.15 py39hecd8cb5_0
cftime 1.6.1 pypi_0 pypi
charset-normalizer 2.1.0 pypi_0 pypi
cloudpickle 2.1.0 pypi_0 pypi
corner 2.2.1 pypi_0 pypi
crds 11.16.5 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
cython 0.29.30 pypi_0 pypi
dask 2022.6.0 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
docutils 0.18.1 pypi_0 pypi
drizzle 1.13.4 pypi_0 pypi
dynesty 1.2.3 pypi_0 pypi
emcee 3.1.2 pypi_0 pypi
eureka 0.2 dev_0
Code of Conduct
- [X] I agree to follow this project's Code of Conduct
When you updated Eureka, somehow your jwst package version didn't get updated. You'll need to install a version >=1.4.0 - I'd recommend 1.6.0. And make sure all your other packages get updated too. When in doubt, make a new environment and install there
Thanks, Taylor. I was meticulously following the install instructions from the Read the Docs page, which are probably out of date. I'll create a new environment with the latest versions of everything and try it again. I'll post the results here.
Out of curiosity, did you follow the update part or the installation part of the instructions? I'm confused why the other packages didn't get updated and want to avoid that happening again in the future
It was a a new install, but I may have done something wrong. It seems weird that it would grab an old version of the pipeline.
My laptop is still grinding away, but it looks like whatever caused the earlier error was fixed my installing the JWST pipeline manually.
I'll post the packages in the new environment after it's done with the stage 1 processing
S1 finished with a few warnings, but no errors.
The packages in the new environment were:
alabaster 0.7.12 pypi_0 pypi
appnope 0.1.2 py39hecd8cb5_1001
argon2-cffi 21.3.0 pyhd3eb1b0_0
argon2-cffi-bindings 21.2.0 py39hca72f7f_0
asdf 2.12.0 pypi_0 pypi
asdf-astropy 0.2.1 pypi_0 pypi
asdf-coordinates-schemas 0.1.0 pypi_0 pypi
asdf-standard 1.0.2 pypi_0 pypi
asdf-transform-schemas 0.2.2 pypi_0 pypi
asdf-wcs-schemas 0.1.1 pypi_0 pypi
asteval 0.9.27 pypi_0 pypi
astraeus 0.2 pypi_0 pypi
astropy 5.1 pypi_0 pypi
astropy-healpix 0.6 pypi_0 pypi
astroquery 0.4.6 pypi_0 pypi
astroscrappy 1.1.0 pypi_0 pypi
asttokens 2.0.5 pyhd3eb1b0_0
attrs 21.4.0 pyhd3eb1b0_0
babel 2.10.3 pypi_0 pypi
backcall 0.2.0 pyhd3eb1b0_0
batman-package 2.4.9 pypi_0 pypi
bayesicfitting 3.0.1 pypi_0 pypi
beautifulsoup4 4.11.1 py39hecd8cb5_0
blas 1.0 mkl
bleach 4.1.0 pyhd3eb1b0_0
bokeh 2.4.3 pypi_0 pypi
bottleneck 1.3.5 pypi_0 pypi
ca-certificates 2022.4.26 hecd8cb5_0
ccdproc 2.3.1 pypi_0 pypi
celerite 0.4.2 pypi_0 pypi
certifi 2022.6.15 py39hecd8cb5_0
cffi 1.15.0 py39hc55c11b_1
cftime 1.6.1 pypi_0 pypi
charset-normalizer 2.1.0 pypi_0 pypi
cloudpickle 2.1.0 pypi_0 pypi
corner 2.2.1 pypi_0 pypi
crds 11.16.5 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
cython 0.29.30 pypi_0 pypi
dask 2022.6.0 pypi_0 pypi
debugpy 1.5.1 py39he9d5cce_0
decorator 5.1.1 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
docutils 0.18.1 pypi_0 pypi
drizzle 1.13.4 pypi_0 pypi
dynesty 1.2.3 pypi_0 pypi
emcee 3.1.2 pypi_0 pypi
entrypoints 0.4 py39hecd8cb5_0
eureka 0.2.1 pypi_0 pypi
executing 0.8.3 pyhd3eb1b0_0
exotic-ld 2.0.0 pypi_0 pypi
filelock 3.7.1 pypi_0 pypi
fonttools 4.34.4 pypi_0 pypi
fsspec 2022.5.0 pypi_0 pypi
future 0.18.2 pypi_0 pypi
george 0.4.0 pypi_0 pypi
gwcs 0.18.1 pypi_0 pypi
h5netcdf 1.0.1 pypi_0 pypi
h5py 3.1.0 pypi_0 pypi
html5lib 1.1 pypi_0 pypi
icu 58.2 h0a44026_3
idna 3.3 pypi_0 pypi
imageio 2.19.3 pypi_0 pypi
imagesize 1.4.1 pypi_0 pypi
importlib-metadata 4.12.0 pypi_0 pypi
iniconfig 1.1.1 pypi_0 pypi
intel-openmp 2021.4.0 hecd8cb5_3538
ipykernel 6.9.1 py39hecd8cb5_0
ipython 8.4.0 py39hecd8cb5_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.5 pyhd3eb1b0_1
jedi 0.18.1 py39hecd8cb5_1
jinja2 3.0.3 pyhd3eb1b0_0
jmespath 1.0.1 pypi_0 pypi
jpeg 9e hca72f7f_0
jsonschema 4.4.0 py39hecd8cb5_0
jupyter 1.0.0 py39hecd8cb5_7
jupyter_client 7.2.2 py39hecd8cb5_0
jupyter_console 6.4.3 pyhd3eb1b0_0
jupyter_core 4.10.0 py39hecd8cb5_0
jupyterlab_pygments 0.1.2 py_0
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
jwst 1.6.1 pypi_0 pypi
keyring 23.7.0 pypi_0 pypi
kiwisolver 1.4.3 pypi_0 pypi
libcxx 12.0.0 h2f01273_0
libffi 3.3 hb1e8313_2
libpng 1.6.37 ha441bb4_0
libsodium 1.0.18 h1de35cc_0
lmfit 1.0.3 pypi_0 pypi
locket 1.0.0 pypi_0 pypi
lxml 4.9.1 pypi_0 pypi
markupsafe 2.1.1 py39hca72f7f_0
matplotlib 3.5.2 pypi_0 pypi
matplotlib-inline 0.1.2 pyhd3eb1b0_2
mistune 0.8.4 py39h9ed2024_1000
mkl 2021.4.0 hecd8cb5_637
mkl-service 2.4.0 py39h9ed2024_0
mkl_fft 1.3.1 py39h4ab4a9b_0
mkl_random 1.2.2 py39hb2f4e1b_0
nbclient 0.5.13 py39hecd8cb5_0
nbconvert 6.4.4 py39hecd8cb5_0
nbformat 5.3.0 py39hecd8cb5_0
ncurses 6.3 hca72f7f_3
nest-asyncio 1.5.5 py39hecd8cb5_0
netcdf4 1.6.0 pypi_0 pypi
networkx 2.8.4 pypi_0 pypi
notebook 6.4.11 py39hecd8cb5_0
numpy 1.22.3 py39h2e5f0a9_0
numpy-base 1.22.3 py39h3b1a694_0
numpydoc 1.4.0 pypi_0 pypi
openssl 1.1.1q hca72f7f_0
packaging 21.3 pyhd3eb1b0_0
pandas 1.4.3 pypi_0 pypi
pandocfilters 1.5.0 pyhd3eb1b0_0
parsley 1.3 pypi_0 pypi
parso 0.8.3 pyhd3eb1b0_0
partd 1.2.0 pypi_0 pypi
pexpect 4.8.0 pyhd3eb1b0_3
photutils 1.5.0 pypi_0 pypi
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 9.2.0 pypi_0 pypi
pip 22.1.2 py39hecd8cb5_0
pluggy 1.0.0 pypi_0 pypi
poppy 1.0.3 pypi_0 pypi
prometheus_client 0.13.1 pyhd3eb1b0_0
prompt-toolkit 3.0.20 pyhd3eb1b0_0
prompt_toolkit 3.0.20 hd3eb1b0_0
psutil 5.9.1 pypi_0 pypi
ptyprocess 0.7.0 pyhd3eb1b0_2
pure_eval 0.2.2 pyhd3eb1b0_0
py 1.11.0 pypi_0 pypi
pycparser 2.21 pyhd3eb1b0_0
pyerfa 2.0.0.1 pypi_0 pypi
pygments 2.11.2 pyhd3eb1b0_0
pyparsing 3.0.4 pyhd3eb1b0_0
pyqt 5.9.2 py39h23ab428_6
pyrsistent 0.18.0 py39hca72f7f_0
pysynphot 2.0.0 pypi_0 pypi
pytest 7.1.2 pypi_0 pypi
python 3.9.12 hdfd78df_1
python-dateutil 2.8.2 pyhd3eb1b0_0
python-fastjsonschema 2.15.1 pyhd3eb1b0_0
pytz 2022.1 pypi_0 pypi
pyvo 1.3 pypi_0 pypi
pywavelets 1.3.0 pypi_0 pypi
pyyaml 6.0 pypi_0 pypi
pyzmq 23.2.0 py39he9d5cce_0
qt 5.9.7 h468cd18_1
qtconsole 5.3.1 py39hecd8cb5_0
qtpy 2.0.1 pyhd3eb1b0_0
readline 8.1.2 hca72f7f_1
reproject 0.8 pypi_0 pypi
requests 2.28.1 pypi_0 pypi
scikit-image 0.19.3 pypi_0 pypi
scipy 1.8.1 pypi_0 pypi
semantic-version 2.10.0 pypi_0 pypi
send2trash 1.8.0 pyhd3eb1b0_1
setuptools 61.2.0 py39hecd8cb5_0
sip 4.19.13 py39h23ab428_0
six 1.16.0 pyhd3eb1b0_1
snowballstemmer 2.2.0 pypi_0 pypi
soupsieve 2.3.1 pyhd3eb1b0_0
spherical-geometry 1.2.22 pypi_0 pypi
sphinx 5.0.2 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 pypi_0 pypi
sphinxcontrib-devhelp 1.0.2 pypi_0 pypi
sphinxcontrib-htmlhelp 2.0.0 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.3 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.5 pypi_0 pypi
sqlite 3.38.5 h707629a_0
stack_data 0.2.0 pyhd3eb1b0_0
stcal 1.0.0 pypi_0 pypi
stdatamodels 0.4.3 pypi_0 pypi
stpipe 0.4.1 pypi_0 pypi
stsci-image 2.3.5 pypi_0 pypi
stsci-imagestats 1.6.3 pypi_0 pypi
stsci-stimage 0.2.5 pypi_0 pypi
svo-filters 0.4.3 pypi_0 pypi
terminado 0.13.1 py39hecd8cb5_0
testpath 0.6.0 py39hecd8cb5_0
tifffile 2022.5.4 pypi_0 pypi
tk 8.6.12 h5d9f67b_0
tomli 2.0.1 pypi_0 pypi
toolz 0.12.0 pypi_0 pypi
tornado 6.1 py39h9ed2024_0
tqdm 4.64.0 pypi_0 pypi
traitlets 5.1.1 pyhd3eb1b0_0
tweakwcs 0.7.4 pypi_0 pypi
typing-extensions 4.1.1 hd3eb1b0_0
typing_extensions 4.1.1 pyh06a4308_0
tzdata 2022a hda174b7_0
uncertainties 3.1.7 pypi_0 pypi
urllib3 1.26.10 pypi_0 pypi
wcwidth 0.2.5 pyhd3eb1b0_0
webencodings 0.5.1 py39hecd8cb5_1
wheel 0.37.1 pyhd3eb1b0_0
widgetsnbextension 3.5.2 py39hecd8cb5_0
wiimatch 0.2.1 pypi_0 pypi
xarray 2022.3.0 pypi_0 pypi
xz 5.2.5 hca72f7f_1
zeromq 4.3.4 h23ab428_0
zipp 3.8.1 pypi_0 pypi
zlib 1.2.12 h4dc903c_2
Okay, I'll relabel this issue as a potential issue with installing with the conda environment file then and look into it more when I get the chance