Keren Zhou

I've downloaded data_repo of hg19 from [this link ](https://drive.google.com/uc?export=download&confirm=V4Wy&id=0ByYcg0axX7udUDRxcTdZZkg0X1k). But I found that the "coverage.stats" file is empty.

Dear Viraj, I really need these information, please give me some suggestions.

At least, I want to know the contents of "coverage.stats" file. Thanks!

Hi Viraj, Thank you so much for your reply. The AmpliconArchitect was in stalled by HPC manager. But I can reset the environment variable AA_DATA_REPO. Thank you for working on...

Hi Jens, Thank you so much for your support! Wait for your good news! Thanks, Keren

Hi Jens, Should I re-install AmpliconArchitect from your github project? Thanks, Keren

Thank you so much, Jens! On Wed, Feb 5, 2020 at 12:24 PM Jens Luebeck wrote: > Hi Keren, > > Yes, you will need my fork as it has...

> Hi Keren, > > Yes, you will need my fork as it has the command line arguments updated to specify the hg38 reference. Furthermore, please check out [PrepareAA](https://github.com/jluebeck/PrepareAA) for...

Hi Jens, In my opinion, `data_repo/GRCh37` and `data_repo/hg19` are actually refereed to the same reference genome with different formats (eg. chromosome names in `data_repo/GRCh37` are not prefixed with "chr"). In...

Hi Viraj and Jens, Oh, I never noticed that there is no difference for naming convention of chromosomes between UCSC and NCBI, because I only use the sequence from UCSC...