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Repo for Tang et al, bioRxiv 454793 (2018)

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Hello, I am attempting to reproduce your results but am seeing differences in the WSI CNN count results. Example WSI NA5001_2AB: - My results. Cored: 41, Diffuse: 288, CAA: 649...

I have being able to run notebooks 1.1, 1.2 and 1.3 successfully, but i am having issues with 2.1, i wanted to know how the CSVs directory and the excel...