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Error while downloading genera
Hello,
Below is the command and error that I am getting while downloading species of Bradyrhizobium, and Leucobacter. Is this an issue on the ncbi side or the script?
(NCBIDownload) sanyalab:./CONTAMINANTS/MODEL_BACTERIAL_GENOMES$ ncbi-genome-download --section refseq --formats fasta --assembly-levels "chromosome,complete" --genera "Bradyrhizobium,Leucobacter" --progress-bar bacteria
ERROR: Invalid line length in summary file line 188868. Expected 23, got 5. Attempting to fix.
ERROR: Failed to fix line 188868, skipping.
ERROR: Invalid line length in summary file line 189073. Expected 23, got 21. Attempting to fix.
ERROR: Failed to fix line 189073, skipping.
ERROR: Invalid line length in summary file line 189505. Expected 23, got 41. Attempting to fix.
ERROR: Failed to fix line 189505, skipping.
ERROR: Invalid line length in summary file line 191895. Expected 23, got 27. Attempting to fix.
ERROR: Failed to fix line 191895, skipping.
start download. No parallel
100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 31/31 [00:11<00:00, 2.59it/s]
Thanks Abhijit