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make -C submodules/Flye error

Open Penny2023James opened this issue 11 months ago • 3 comments

Hi I faced an error when I tried to make submodules/Flye

######################################################### z5438778@k250:~/stRainy $ make -C submodules/Flye make: Entering directory '/home/z5438778/stRainy/submodules/Flye' make -C /home/z5438778/stRainy/submodules/Flye/lib/minimap2 -j 4 make[1]: Entering directory '/home/z5438778/stRainy/submodules/Flye/lib/minimap2' cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC bseq.c -o bseq.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC sketch.c -o sketch.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC sdust.c -o sdust.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC options.c -o options.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC index.c -o index.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC chain.c -o chain.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC align.c -o align.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC hit.c -o hit.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC map.c -o map.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC format.c -o format.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC pe.c -o pe.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC esterr.c -o esterr.o cc -c -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC splitidx.c -o splitidx.o cc -c -g -Wall -O2 -Wc++-compat -msse2 -DHAVE_KALLOC ksw2_ll_sse.c -o ksw2_ll_sse.o cc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_extz2_sse.c -o ksw2_extz2_sse41.o cc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_extd2_sse.c -o ksw2_extd2_sse41.o cc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_exts2_sse.c -o ksw2_exts2_sse41.o cc -c -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_extz2_sse.c -o ksw2_extz2_sse2.o cc -c -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_extd2_sse.c -o ksw2_extd2_sse2.o cc -c -g -Wall -O2 -Wc++-compat -msse2 -mno-sse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY ksw2_exts2_sse.c -o ksw2_exts2_sse2.o cc -c -g -Wall -O2 -Wc++-compat -msse4.1 -DHAVE_KALLOC -DKSW_CPU_DISPATCH ksw2_dispatch.c -o ksw2_dispatch.o ar -csru libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o chain.o align.o hit.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o cc -g -Wall -O2 -Wc++-compat main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread /bin/ld: main.o: unable to initialize decompress status for section .debug_info /bin/ld: main.o: unable to initialize decompress status for section .debug_info /bin/ld: main.o: unable to initialize decompress status for section .debug_info /bin/ld: main.o: unable to initialize decompress status for section .debug_info main.o: file not recognized: File format not recognized collect2: error: ld returned 1 exit status make[1]: *** [Makefile:46: minimap2] Error 1 make[1]: Leaving directory '/home/z5438778/stRainy/submodules/Flye/lib/minimap2' make: *** [Makefile:25: /home/z5438778/stRainy/submodules/Flye/bin/flye-minimap2] Error 2 make: Leaving directory '/home/z5438778/stRainy/submodules/Flye' ############################################################################ Does anyone know how to solve this? Any suggestions are welcome Thank you

Penny2023James avatar Jul 27 '23 04:07 Penny2023James