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ggviolin wrong y axis when compare two group with small sample number
Hello, when I use ggviolin plot two group, I got wrong y axis.
my data CN_burden max is 4229, min is 141, but I got fllowing y axis.
my code is fllowing:
p <- ggviolin(subdf, x = cnames[gidx], y = burden_col, fill = cnames[gidx],
palette = c("#00AFBB", "#E7B800"), ylab = burden_col,
add = "boxplot", add.params = list(fill = "white"))
p <- p + stat_compare_means(comparisons = my_comparisons,
label = "p.signif", na.rm=TRUE)
p + stat_compare_means(label.y = labely,label.x = labelx, na.rm=TRUE)
fllowing is my save.image()
fllowing is my sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /beegfs/work/user/rdd_admin/software/miniconda39/envs/r403/lib/libopenblasp-r0.3.18.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] dplyr_1.0.7 ggpubr_0.4.0 ggplot2_3.3.5 optparse_1.7.1
loaded via a namespace (and not attached):
[1] zip_2.2.0 Rcpp_1.0.7 cellranger_1.1.0 pillar_1.6.4
[5] compiler_4.1.0 forcats_0.5.1 tools_4.1.0 digest_0.6.28
[9] lifecycle_1.0.1 tibble_3.1.6 gtable_0.3.0 pkgconfig_2.0.3
[13] rlang_0.4.12 openxlsx_4.2.4 cli_3.1.0 DBI_1.1.1
[17] curl_4.3.2 haven_2.4.3 rio_0.5.27 withr_2.4.2
[21] hms_1.1.1 generics_0.1.1 vctrs_0.3.8 grid_4.1.0
[25] getopt_1.20.3 tidyselect_1.1.1 glue_1.4.2 data.table_1.14.2
[29] R6_2.5.1 rstatix_0.7.0 fansi_0.5.0 readxl_1.3.1
[33] foreign_0.8-81 carData_3.0-4 farver_2.1.0 purrr_0.3.4
[37] tidyr_1.1.4 car_3.0-11 magrittr_2.0.1 scales_1.1.1
[41] backports_1.3.0 ellipsis_0.3.2 abind_1.4-5 assertthat_0.2.1
[45] colorspace_2.0-2 ggsignif_0.6.3 labeling_0.4.2 utf8_1.2.2
[49] stringi_1.7.5 munsell_0.5.0 broom_0.7.11 crayon_1.4.2