qc_report

[layal-khayal]

I used the correct syntax qc_report("~/Documents/QC_BT/OB_001_fastqc.zip", result.file = "OB_001", interpret = TRUE)

the error was

processing file: sample-report-interpret.Rmd |.......................................................................................... | 98% [kmer-content]
Quitting from lines at lines 316-317 [kmer-content] (sample-report-interpret.Rmd) Error in switch(): ! EXPR must be a length 1 vector Backtrace:

1. fastqcr::qc_plot(qc, "Kmer content")
2. base::lapply(...)
3. fastqcr (local) FUN(X[[i]], ...)
4. fastqcr (local) plot.func(qc, status = status)
5. ggplot2::element_text(...)