fastqcr
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kassambara
fastqcr: Quality Control of Sequencing Data
Dear Alboukadel, Many thanks for this and other handy R packages! I've beein using `qc_read_collection()`, on many `"*_fastqc.zip"` files, and noticed that this function suffers from dplyr issue [#5358](https://github.com/tidyverse/dplyr/issues/5358) when...
I am getting the following error when running fastqc_install() ``` > fastqc_install() Error in open.connection(x, "rb") : SSL certificate problem: certificate has expired ```
Hi, I ran into an issue with a bunch of FASTQC files which include colon`:` in their filenames. Renaming the files is not an option. While this char is not...
I am using fastqcr with R 4.1.0. I tried to execute qc_report function for a single zip archive within my user's directory, but I have met a Error msg like...
Hi, thanks for the great tool! I have a small question: I am trimming my reads at a certain base position based on the sequence quality. Could you help me...
Hello developers of fastqcr: I'm wondering, do you use mouse or human genome as the reference for the theoretical distribution?(eg. theoretical distribution for per sequence GC content), wasn't able to...
Hi! I installed the package in R and tried to run it (using the fastqc() function) but there was a check on whether or not my system was unix based...
Hi, I would like to plot FastQC data of multiple samples, but I encounter a problem with the qc_read_collection function (while the qc_read and qc_report functions work fine). Do you...
Hi @kassambara I previously suggested `qc_read_collection` and `qc_plot_collection` to handle multiple files of the `fastqc` output. The read function is however limited to using the raw `fastqc` files. I want...
