mutt does not display existing messages found in notmuch

[nicoe]

I had an issue where the count of the message given in the virtual folder list and the one from a command line search where different. Running mutt with the debug flag I noticed this line:

[2016-08-22 17:19:55] nm: failed to parse message: /home/nicoe/Maildir//home/nicoe/sent/cur/1471818793.R13645651596752283762.balisto:2,S

which points to a wrong filename.

Using notmuch show id:[email protected] indicates that it is not the correct file path for the message.

Running notmuch new did not solve the issue.