SnapATAC2

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Cannot compute joint embedding on RNA and ATAC object

3

I am following [this tutorial](https://kzhang.org/SnapATAC2/tutorials/modality.html) to jointly embed my single-nucelus multiome capture from 10X. I have already filtered both RNA and ATAC objects to the same cells, and made sure...

thecatsmilk

Unexpected Abortion When Subsetting Data

1

Hi Kai, I recently upgraded snapatac2 using `pip install snapatac2 -U` and encountered an error when I tried to subset an anndata object using the following code: `data_subset = data.subset(obs_idx,...

wkl1990

Saving raw h5ad files upon running snap.pp.import_data

3

Hey Kai, Thanks so much for developing snapATAC2. I've been using it for a bit and really like it! I do have one question regarding working with files in backed...

joseverdezoto