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combine several AnnDataSets into one AnnDataSet

Open Susan920715 opened this issue 1 year ago • 2 comments

Hello,everyone,how can I combine several AnnDataSets into one AnnDataSet? also,I don't quite understand, when I read a dataset, how do I get each object in it? I am a green hand, I don't understand many places, thank you very much!

Susan920715 avatar Feb 02 '24 13:02 Susan920715

AnnDataSet provide concatenated view of multiple AnnData objects. You can't combine AnnDataSet objects. AnnDataSet stores links to AnnData objects (h5ad files). To combine several AnnDataSet objects, you can recreate a new AnnDataSet using component h5ad files. To access individual AnnData object, you just need to open the relevant file using snap.read directly.

kaizhang avatar Feb 04 '24 02:02 kaizhang

I see. Thank you very much for your answer!

Susan920715 avatar Feb 04 '24 02:02 Susan920715