AdFem.jl
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Published
20 hours ago •
kailaix
kailaix
Building error on macOS
Hello, I want to try AdFem.jl and I installed it. But when I built the dependent package ADCME.jl, an error occurred. Here is some environment information: System: macOS 10.15.7 Julia version: v1.5.2 Error message:
(@v1.5) pkg> build ADCME
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/BcTLp/deps/build.log`
Building CMake ─→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building HDF5 ──→ `~/.julia/packages/HDF5/T1b9x/deps/build.log`
Building FFTW ──→ `~/.julia/packages/FFTW/DMUbN/deps/build.log`
Building ADCME ─→ `~/.julia/packages/ADCME/fic9z/deps/build.log`
┌ Error: Error building `ADCME`:
│ PREFIX=/Users/chenzhao/.julia/adcme
│ Unpacking payload ...
Extracting : tensorflow-1.15.0-mkl_py37hb249377_0.conda: 0%| | 0/86 [Extracting : tensorflow-1.15.0-mkl_py37hb249377_0.conda: 1%| | 1/86 [Extracting : urllib3-1.25.8-py37_0.conda: 1%| | 1/86 [00:00<00:25, 3 concurrent.futures.process._RemoteTraceback:
│ '''
│ Traceback (most recent call last):
│ File "concurrent/futures/process.py", line 368, in _queue_management_worker
│ File "multiprocessing/connection.py", line 251, in recv
│ TypeError: __init__() missing 1 required positional argument: 'msg'
│ '''
│
│ The above exception was the direct cause of the following exception:
│
│ Traceback (most recent call last):
│ File "entry_point.py", line 69, in <module>
│ File "concurrent/futures/process.py", line 484, in _chain_from_iterable_of_lists
│ File "concurrent/futures/_base.py", line 611, in result_iterator
│ File "concurrent/futures/_base.py", line 439, in result
│ File "concurrent/futures/_base.py", line 388, in __get_result
│ concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.
│ [1986] Failed to execute script entry_point
│ ┌ Warning: Pkg.installed() is deprecated
│ └ @ Pkg /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:554
│ ┌ Warning: Pkg.installed() is deprecated
│ └ @ Pkg /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:554
│ [ Info: Your Julia version is 1.5.2, current ADCME version is 0.6.2, ADCME dependencies installation path: /Users/chenzhao/.julia/adcme
│ [ Info: --------------- (1/6) Install Tensorflow Dependencies ---------------
│ [ Info: Installing miniconda...
│ ERROR: LoadError: LoadError: failed process: Process(`bash Miniconda3-py37_4.8.3-MacOSX-x86_64.sh -f -b -p adcme`, ProcessExited(1)) [1]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /Users/chenzhao/.julia/packages/ADCME/fic9z/deps/install_adcme.jl:48
│ [5] include(::String) at ./client.jl:457
│ [6] top-level scope at /Users/chenzhao/.julia/packages/ADCME/fic9z/deps/build.jl:55
│ [7] include(::String) at ./client.jl:457
│ [8] top-level scope at none:5
│ in expression starting at /Users/chenzhao/.julia/packages/ADCME/fic9z/deps/install_adcme.jl:19
│ in expression starting at /Users/chenzhao/.julia/packages/ADCME/fic9z/deps/build.jl:55
└ @ Pkg.Operations /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:949
Could you check if you are able to install Miniconda in the adcme directory? (You may need to remove /Users/chenzhao/.julia/adcme if it already exists)
cd /Users/chenzhao/.julia/
bash Miniconda3-py37_4.8.3-MacOSX-x86_64.sh -f -b -p adcme
Thanks @kailaix ! The building of ADCME.jl passed. However, the building of AdFem.jl failed. It seems like there is something wrong with the clang compiler.
(@v1.5) pkg> build AdFem
Building HDF5 ──→ `~/.julia/packages/HDF5/T1b9x/deps/build.log`
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/BcTLp/deps/build.log`
Building CMake ─→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building FFTW ──→ `~/.julia/packages/FFTW/DMUbN/deps/build.log`
Building ADCME ─→ `~/.julia/packages/ADCME/87dLQ/deps/build.log`
Building AdFem ─→ `~/.julia/dev/AdFem/deps/build.log`
┌ Error: Error building `AdFem`:
│ WARNING: Method definition size(PyCall.PyObject) in module PyCall at /Users/chenzhao/.julia/packages/PyCall/BcTLp/src/PyCall.jl:809 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/variable.jl:212.
│ ** incremental compilation may be fatally broken for this module **
│
│ WARNING: Method definition length(PyCall.PyObject) in module PyCall at /Users/chenzhao/.julia/packages/PyCall/BcTLp/src/PyCall.jl:808 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/variable.jl:236.
│ ** incremental compilation may be fatally broken for this module **
│
│ WARNING: Method definition lastindex(PyCall.PyObject) in module PyCall at deprecated.jl:70 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/variable.jl:424.
│ ** incremental compilation may be fatally broken for this module **
│
│ WARNING: Method definition *(PyCall.PyObject, PyCall.PyObject) in module PyCall at /Users/chenzhao/.julia/packages/PyCall/BcTLp/src/pyoperators.jl:11 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/ops.jl:102.
│ ** incremental compilation may be fatally broken for this module **
│
│ -- The C compiler identification is unknown
│ -- The CXX compiler identification is unknown
│ -- Check for working C compiler: /Users/chenzhao/.julia/adcme/bin/clang
│ -- Check for working C compiler: /Users/chenzhao/.julia/adcme/bin/clang -- broken
│ CMake Error at /Users/chenzhao/.julia/packages/CMake/ULbyn/deps/downloads/cmake-3.15.3-Darwin-x86_64/CMake.app/Contents/share/cmake-3.15/Modules/CMakeTestCCompiler.cmake:60 (message):
│ The C compiler
│
│ "/Users/chenzhao/.julia/adcme/bin/clang"
│
│ is not able to compile a simple test program.
│
│ It fails with the following output:
│
│ Change Dir: /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build/CMakeFiles/CMakeTmp
│
│ Run Build Command(s):/Users/chenzhao/.julia/adcme/bin/ninja cmTC_187c5 && [1/2] Building C object CMakeFiles/cmTC_187c5.dir/testCCompiler.c.o
│ FAILED: CMakeFiles/cmTC_187c5.dir/testCCompiler.c.o
│ /Users/chenzhao/.julia/adcme/bin/clang -o CMakeFiles/cmTC_187c5.dir/testCCompiler.c.o -c testCCompiler.c
│ dyld: Library not loaded: @rpath/libLLVM-10.dylib
│ Referenced from: /Users/chenzhao/.julia/adcme/bin/clang
│ Reason: no suitable image found. Did find:
│ /Users/chenzhao/.julia/adcme/lib/libLLVM-10.dylib: truncated mach-o error: segment __TEXT extends to 58675200 which is past end of file 11278336
│ /Users/chenzhao/.julia/adcme/lib/libLLVM-10.dylib: stat() failed with errno=1
│ /Users/chenzhao/.julia/adcme/bin/../lib/libLLVM-10.dylib: truncated mach-o error: segment __TEXT extends to 58675200 which is past end of file 11278336
│ /Users/chenzhao/.julia/adcme/bin/../lib/libLLVM-10.dylib: stat() failed with errno=1
│ /Users/chenzhao/.julia/adcme/bin/../lib/libLLVM-10.dylib: truncated mach-o error: segment __TEXT extends to 58675200 which is past end of file 11278336
│ /Users/chenzhao/.julia/adcme/bin/../lib/libLLVM-10.dylib: stat() failed with errno=1
│ /Users/chenzhao/.julia/adcme/lib/libLLVM-10.dylib: truncated mach-o error: segment __TEXT extends to 58675200 which is past end of file 11278336
│ /Users/chenzhao/.julia/adcme/lib/libLLVM-10.dylib: stat() failed with errno=1
│ ninja: build stopped: subcommand failed.
│
│
│
│
│
│ CMake will not be able to correctly generate this project.
│ Call Stack (most recent call first):
│ CMakeLists.txt:2 (project)
│
│
│ -- Configuring incomplete, errors occurred!
│ See also "/Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build/CMakeFiles/CMakeOutput.log".
│ See also "/Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build/CMakeFiles/CMakeError.log".
│ ninja: error: loading 'build.ninja': No such file or directory
│ ┌ Warning: Cannot load /Users/chenzhao/.julia/packages/ADCME/87dLQ/deps/CustomOps/build/libadcme.dylib. Please recompile the shared library by `ADCME.precompile()` for using custom operators.
│ └ @ ADCME ~/.julia/packages/ADCME/87dLQ/src/ADCME.jl:92
│ [ Info: Copy "/Users/chenzhao/.julia/packages/ADCME/87dLQ/src/../deps/AdeptCMakeLists.txt" to "/Users/chenzhao/.julia/adcme/lib/Adept-2/adept/CMakeLists.txt" ...
│ [ Info: Remove /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build ...
│ [ Info: Make /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build ...
│ [ Info: Change directory into /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build ...
│ [ Info: Cmake ...
│ [ Info: Changed to directory /Users/chenzhao/.julia/adcme/lib/Libraries
│ [ Info: File mfem.zip exists
│ [ Info: File /Users/chenzhao/.julia/adcme/lib/Libraries/mfem-shared-msvc-dev exists
│ [ Info: Changed to directory mfem-shared-msvc-dev/build
│ [ Info: File CMakeCache.txt exists
│ ERROR: LoadError: failed process: Process(setenv(`/Users/chenzhao/.julia/adcme/bin/ninja -j20`,["_CE_M=", "LSCOLORS=Gxfxcxdxbxegedabagacad", "PATH=/Users/chenzhao/.local/bin:/Users/chenzhao/opt/miniconda3/bin:/Users/chenzhao/opt/miniconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin", "HDF5_USE_FILE_LOCKING=FALSE", "LD_LIBRARY_PATH=/Users/chenzhao/.julia/adcme/lib", "ITERM_PROFILE=Default", "USER=chenzhao", "LESS=-R", "CONDA_PROMPT_MODIFIER=", "SHELL=/bin/zsh" … "TERM_PROGRAM_VERSION=3.3.12", "ZSH=/Users/chenzhao/.oh-my-zsh", "PWD=/Users/chenzhao/.julia/adcme/bin", "TERM_PROGRAM=iTerm.app", "__KMP_REGISTERED_LIB_8145=0x138d6c168-cafe4507-libomp.dylib", "OPENBLAS_NUM_THREADS=8", "CONDA_PREFIX=/Users/chenzhao/opt/miniconda3", "TERM_SESSION_ID=w1t0p0:F40AA86A-4902-4E35-AE1E-42CD4AFEFB93", "JULIA_LOAD_PATH=@:/var/folders/b5/5jdvvgzn7jx42fnvs0r9p8yc0000gn/T/jl_Vazq89", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(1)) [1]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run at ./process.jl:438 [inlined]
│ [4] make() at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/extra.jl:92
│ [5] #282 at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/install.jl:121 [inlined]
│ [6] require_library(::ADCME.var"#282#286", ::String) at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/toolchain.jl:212
│ [7] install_mfem() at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/install.jl:120
│ [8] top-level scope at /Users/chenzhao/.julia/dev/AdFem/deps/build.jl:4
│ [9] include(::String) at ./client.jl:457
│ [10] top-level scope at none:5
│ in expression starting at /Users/chenzhao/.julia/dev/AdFem/deps/build.jl:4
│ Compliation failed
└ @ Pkg.Operations /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:949
It seems like your ADCME is not properly built. How did you solve the ADCME build problem? Installing Miniconda is not the end.
@kailaix I removed the directory ~/.julia/adcme and run the Miniconda script. Then the building of ADCME passed.
Then your installation is not finished. Since you've installed Miniconda manually, could you finish the rest of the installation also manually:
julia> cd("~/.julia/packages/ADCME/87dLQ/deps")
julia> include("build.jl")
If you encounter any error message, please paste the information here.
After manual installation, it still failed in AdFem.jl.
(@v1.5) pkg> build AdFem
Building HDF5 ──→ `~/.julia/packages/HDF5/T1b9x/deps/build.log`
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/BcTLp/deps/build.log`
Building CMake ─→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building FFTW ──→ `~/.julia/packages/FFTW/DMUbN/deps/build.log`
Building ADCME ─→ `~/.julia/packages/ADCME/87dLQ/deps/build.log`
Building AdFem ─→ `~/.julia/dev/AdFem/deps/build.log`
┌ Error: Error building `AdFem`:
│ WARNING: Method definition size(PyCall.PyObject) in module PyCall at /Users/chenzhao/.julia/packages/PyCall/BcTLp/src/PyCall.jl:809 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/variable.jl:212.
│ ** incremental compilation may be fatally broken for this module **
│
│ WARNING: Method definition length(PyCall.PyObject) in module PyCall at /Users/chenzhao/.julia/packages/PyCall/BcTLp/src/PyCall.jl:808 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/variable.jl:236.
│ ** incremental compilation may be fatally broken for this module **
│
│ WARNING: Method definition lastindex(PyCall.PyObject) in module PyCall at deprecated.jl:70 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/variable.jl:424.
│ ** incremental compilation may be fatally broken for this module **
│
│ WARNING: Method definition *(PyCall.PyObject, PyCall.PyObject) in module PyCall at /Users/chenzhao/.julia/packages/PyCall/BcTLp/src/pyoperators.jl:11 overwritten in module ADCME at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/ops.jl:102.
│ ** incremental compilation may be fatally broken for this module **
│
│ -- The C compiler identification is Clang 10.0.1
│ -- The CXX compiler identification is Clang 10.0.1
│ -- Check for working C compiler: /Users/chenzhao/.julia/adcme/bin/clang
│ -- Check for working C compiler: /Users/chenzhao/.julia/adcme/bin/clang -- broken
│ CMake Error at /Users/chenzhao/.julia/packages/CMake/ULbyn/deps/downloads/cmake-3.15.3-Darwin-x86_64/CMake.app/Contents/share/cmake-3.15/Modules/CMakeTestCCompiler.cmake:60 (message):
│ The C compiler
│
│ "/Users/chenzhao/.julia/adcme/bin/clang"
│
│ is not able to compile a simple test program.
│
│ It fails with the following output:
│
│ Change Dir: /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build/CMakeFiles/CMakeTmp
│
│ Run Build Command(s):/Users/chenzhao/.julia/adcme/bin/ninja cmTC_9176c && [1/2] Building C object CMakeFiles/cmTC_9176c.dir/testCCompiler.c.o
│ [2/2] Linking C executable cmTC_9176c
│ FAILED: cmTC_9176c
│ : && /Users/chenzhao/.julia/adcme/bin/clang -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_9176c.dir/testCCompiler.c.o -o cmTC_9176c && :
│ ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib/libSystem.tbd' for architecture x86_64
│ clang-10: error: linker command failed with exit code 1 (use -v to see invocation)
│ ninja: build stopped: subcommand failed.
│
│
│
│
│
│ CMake will not be able to correctly generate this project.
│ Call Stack (most recent call first):
│ CMakeLists.txt:2 (project)
│
│
│ -- Configuring incomplete, errors occurred!
│ See also "/Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build/CMakeFiles/CMakeOutput.log".
│ See also "/Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build/CMakeFiles/CMakeError.log".
│ ninja: error: loading 'build.ninja': No such file or directory
│ ┌ Warning: Cannot load /Users/chenzhao/.julia/packages/ADCME/87dLQ/deps/CustomOps/build/libadcme.dylib. Please recompile the shared library by `ADCME.precompile()` for using custom operators.
│ └ @ ADCME ~/.julia/packages/ADCME/87dLQ/src/ADCME.jl:92
│ [ Info: Copy "/Users/chenzhao/.julia/packages/ADCME/87dLQ/src/../deps/AdeptCMakeLists.txt" to "/Users/chenzhao/.julia/adcme/lib/Adept-2/adept/CMakeLists.txt" ...
│ [ Info: Remove /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build ...
│ [ Info: Make /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build ...
│ [ Info: Change directory into /Users/chenzhao/.julia/adcme/lib/Adept-2/adept/build ...
│ [ Info: Cmake ...
│ [ Info: Changed to directory /Users/chenzhao/.julia/adcme/lib/Libraries
│ [ Info: File mfem.zip exists
│ [ Info: File /Users/chenzhao/.julia/adcme/lib/Libraries/mfem-shared-msvc-dev exists
│ [ Info: Changed to directory mfem-shared-msvc-dev/build
│ [ Info: File CMakeCache.txt exists
│ ERROR: LoadError: failed process: Process(setenv(`/Users/chenzhao/.julia/adcme/bin/ninja -j20`,["_CE_M=", "LSCOLORS=Gxfxcxdxbxegedabagacad", "PATH=/Users/chenzhao/.local/bin:/Users/chenzhao/opt/miniconda3/bin:/Users/chenzhao/opt/miniconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin", "HDF5_USE_FILE_LOCKING=FALSE", "LD_LIBRARY_PATH=/Users/chenzhao/.julia/adcme/lib", "ITERM_PROFILE=Default", "USER=chenzhao", "LESS=-R", "CONDA_PROMPT_MODIFIER=", "SHELL=/bin/zsh" … "TERM_PROGRAM_VERSION=3.3.12", "ZSH=/Users/chenzhao/.oh-my-zsh", "PWD=/Users/chenzhao/.julia", "TERM_PROGRAM=iTerm.app", "__KMP_REGISTERED_LIB_11276=0x11f0dd168-cafeb85a-libomp.dylib", "OPENBLAS_NUM_THREADS=8", "CONDA_PREFIX=/Users/chenzhao/opt/miniconda3", "TERM_SESSION_ID=w1t1p0:1A602A5C-9269-4117-AC7A-6AA1D529064C", "JULIA_LOAD_PATH=@:/var/folders/b5/5jdvvgzn7jx42fnvs0r9p8yc0000gn/T/jl_Dvg9h1", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(1)) [1]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run at ./process.jl:438 [inlined]
│ [4] make() at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/extra.jl:92
│ [5] #282 at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/install.jl:121 [inlined]
│ [6] require_library(::ADCME.var"#282#286", ::String) at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/toolchain.jl:212
│ [7] install_mfem() at /Users/chenzhao/.julia/packages/ADCME/87dLQ/src/install.jl:120
│ [8] top-level scope at /Users/chenzhao/.julia/dev/AdFem/deps/build.jl:4
│ [9] include(::String) at ./client.jl:457
│ [10] top-level scope at none:5
│ in expression starting at /Users/chenzhao/.julia/dev/AdFem/deps/build.jl:4
│ Compliation failed
└ @ Pkg.Operations /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:949
What was the output of
julia> include("build.jl")
when you try to install manually? Were there any errors?
There was no error when installing manually.
julia> include("build.jl")
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:554
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:554
[ Info: Your Julia version is 1.5.2, current ADCME version is 0.6.3, ADCME dependencies installation path: /Users/chenzhao/.julia/adcme
[ Info: --------------- (1/6) Install Tensorflow Dependencies ---------------
[ Info: Installing miniconda...
PREFIX=/Users/chenzhao/.julia/adcme
Unpacking payload ...
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /Users/chenzhao/.julia/adcme
added / updated specs:
- ca-certificates==2020.1.1=0
- certifi==2020.4.5.1=py37_0
- cffi==1.14.0=py37hc512035_1
- chardet==3.0.4=py37_1003
- conda-package-handling==1.6.1=py37h1de35cc_0
- conda==4.8.3=py37_0
- cryptography==2.9.2=py37ha12b0ac_0
- idna==2.9=py_1
- libcxx==10.0.0=1
- libedit==3.1.20181209=hb402a30_0
- libffi==3.3=h0a44026_1
- ncurses==6.2=h0a44026_1
- openssl==1.1.1g=h1de35cc_0
- pip==20.0.2=py37_3
- pycosat==0.6.3=py37h1de35cc_0
- pycparser==2.20=py_0
- pyopenssl==19.1.0=py37_0
- pysocks==1.7.1=py37_0
- python.app==2=py37_10
- python==3.7.7=hf48f09d_4
- readline==8.0=h1de35cc_0
- requests==2.23.0=py37_0
- ruamel_yaml==0.15.87=py37h1de35cc_0
- setuptools==46.4.0=py37_0
- six==1.14.0=py37_0
- sqlite==3.31.1=h5c1f38d_1
- tk==8.6.8=ha441bb4_0
- tqdm==4.46.0=py_0
- urllib3==1.25.8=py37_0
- wheel==0.34.2=py37_0
- xz==5.2.5=h1de35cc_0
- yaml==0.1.7=hc338f04_2
- zlib==1.2.11=h1de35cc_3
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2020.6.2~ --> pkgs/main::ca-certificates-2020.1.1-0
certifi conda-forge::certifi-2020.6.20-py37hc~ --> pkgs/main::certifi-2020.4.5.1-py37_0
conda conda-forge::conda-4.8.4-py37hc8dfbb8~ --> pkgs/main::conda-4.8.3-py37_0
openssl conda-forge::openssl-1.1.1g-haf1e3a3_1 --> pkgs/main::openssl-1.1.1g-h1de35cc_0
Preparing transaction: done
Executing transaction: done
installation finished.
Collecting package metadata (repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 4.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate base
#
# To deactivate an active environment, use
#
# $ conda deactivate
[ Info: --------------- (2/6) Check Python Version ---------------
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:554
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/BcTLp/deps/build.log`
┌ Info: PyCall Python version: /Users/chenzhao/.julia/adcme/bin/python
└ Conda Python version: /Users/chenzhao/.julia/adcme/bin/python
[ Info: --------------- (3/6) Looking for TensorFlow Dynamic Libraries ---------------
[ Info: --------------- (4/6) Preparing Custom Operator Environment ---------------
Requirement already satisfied: matplotlib in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (3.3.2)
Requirement already satisfied: certifi>=2020.06.20 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (2020.6.20)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (1.2.0)
Requirement already satisfied: cycler>=0.10 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (0.10.0)
Requirement already satisfied: numpy>=1.15 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (1.19.1)
Requirement already satisfied: python-dateutil>=2.1 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (2.8.1)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (2.4.7)
Requirement already satisfied: pillow>=6.2.0 in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from matplotlib) (8.0.0)
Requirement already satisfied: six in /Users/chenzhao/.julia/adcme/lib/python3.7/site-packages (from cycler>=0.10->matplotlib) (1.14.0)
[ Info: --------------- (5/6) Skipped: Installing GPU Dependencies ---------------
[ Info: --------------- (6/6) Write Dependency Files ---------------
[ Info: --------------- Finished: /Users/chenzhao/.julia/packages/ADCME/87dLQ/deps/deps.jl ---------------
Hi ChenZhao, may I ask how much time does the step "(3/6) Looking for TensorFlow Dynamic Libraries " take? For me this step seems to be stuck and has already taken 30+ minutes. Thx. @ChenZhao44
