pyodide-kernel Pyodide kernel : status unknown with Edge

Description

Hi guys. Any help would be apreciated. Thanks in advance

I open : https://jupyter.org/try-jupyter/lab/?path=notebooks%2FIntro.ipynb The Pydodide kernel stays in unknown status even after restarting the kernel. (The SQL Lite kernel is working) I deleted cookies, cache... with no success I also tried in a InPrivate window.

Reproduce

Expected behavior

Context

JupyterLite version: 0.1.2
Operating System and version: Windows 10 Pro
Browser and version: Edge Version 117.0.2045.43 (Version officielle) (64 bits)

Browser Output

Output from your browser Javascript console here.

manifest.webmanifest:1
Manifest: property 'url' ignored, should be within scope of the manifest.
manifest.webmanifest:1
Manifest: property 'url' of 'shortcut' not present.
manifest.webmanifest:1
Manifest: property 'url' ignored, should be within scope of the manifest.
manifest.webmanifest:1
Manifest: property 'url' of 'shortcut' not present.
remoteEntry.a37e37c….js:1
Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^2.0.1)
remoteEntry.a37e37c….js:1
Unsatisfied version 1.10.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/messaging (required ^2.0.0)
remoteEntry.a37e37c….js:1
Unsatisfied version 1.12.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/coreutils (required ^2.0.0)
remoteEntry.a37e37c….js:1
Unsatisfied version 1.11.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/signaling (required ^2.0.0)
remoteEntry.a37e37c….js:1
Unsatisfied version 1.9.2 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/algorithm (required ^2.0.0)
remoteEntry.a37e37c….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/translation (required ^4.0.5)
remoteEntry.a37e37c….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/settingregistry (required ^4.0.5)
remoteEntry.a37e37c….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/notebook (required ^4.0.5)
remoteEntry.a37e37c….js:1
Unsatisfied version 6.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/services (required ^7.0.5)
remoteEntry.a37e37c….js:1
Unsatisfied version 1.8.2 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/properties (required ^2.0.0)
remoteEntry.a37e37c….js:1
No satisfying version (^4.0.5) of shared module @jupyterlab/outputarea found in shared scope default.
Available versions: 3.5.3 from _JUPYTERLAB.CORE_OUTPUT
remoteEntry.a37e37c….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/logconsole (required ^4.0.5)
remoteEntry.a37e37c….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/rendermime (required ^4.0.5)
remoteEntry.a37e37c….js:1
Unsatisfied version 1.10.4 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/disposable (required ^2.0.0)
remoteEntry.a37e37c….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/mainmenu (required ^4.0.5)
remoteEntry.b15a25c….js:1
Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^2.0.1)
remoteEntry.6a76d3e….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/apputils (required ^4.0.0)
remoteEntry.6a76d3e….js:1
Unsatisfied version 1.9.2 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/algorithm (required ^2.0.0)
remoteEntry.6a76d3e….js:1
Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^2.0.1)
remoteEntry.6a76d3e….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/ui-components (required ^4.0.0)
remoteEntry.ade7222….js:1
Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^1.37.2)
remoteEntry.edc72ee….js:1
Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^1.37.2)
remoteEntry.74a3757….js:1
Unsatisfied version 5.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/coreutils (required ^5.6.3)
remoteEntry.74a3757….js:1
Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/application (required ^3.6.3)
remoteEntry.d50eb71….js:1
Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^1.37.2)
service-manager.ts:50 Registering new JupyterLite ServiceWorker https://jupyter.org/try-jupyter/service-worker-f7de73d.js
service-manager.ts:52 JupyterLite ServiceWorker was sucessfully registered
index.ts:235 Kernel filesystem and JupyterLite contents will be synced
index.js:51 Pyodide contents will be synced with Jupyter Contents
pyodide.asm.js:9 Loading micropip, packaging
pyodide.asm.js:9 Loaded packaging, micropip
pyodide.asm.js:9 Loading sqlite3
pyodide.asm.js:9 Loaded sqlite3
336.ebc7a55ea1768712…7a55ea1768712771f:1
Failed to fetch ipywidgets through the "jupyter.widget.control" comm channel, fallback to fetching individual model state. Reason: Control comm did not respond in time
kernel.js:40
Uncaught (in promise) PythonError: Traceback (most recent call last):
File "/lib/python311.zip/_pyodide/_base.py", line 571, in eval_code_async
await CodeRunner(
File "/lib/python311.zip/_pyodide/_base.py", line 396, in run_async
await coroutine
File "", line 4, in 
File "/lib/python3.11/site-packages/piplite/piplite.py", line 116, in _install
return await micropip.install(
^^^^^^^^^^^^^^^^^^^^^^^
File "/lib/python3.11/site-packages/micropip/_commands/install.py", line 138, in install
await transaction.gather_requirements(requirements)
File "/lib/python3.11/site-packages/micropip/transaction.py", line 197, in gather_requirements
await asyncio.gather(*requirement_promises)
File "/lib/python3.11/site-packages/micropip/transaction.py", line 204, in add_requirement
return await self.add_requirement_inner(Requirement(req))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/lib/python3.11/site-packages/micropip/transaction.py", line 319, in add_requirement_inner
await self.add_wheel(wheel, req.extras, specifier=str(req.specifier))
File "/lib/python3.11/site-packages/micropip/transaction.py", line 355, in add_wheel
await wheel.download(self.fetch_kwargs)
File "/lib/python3.11/site-packages/micropip/transaction.py", line 98, in download
data = await self._fetch_bytes(fetch_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/lib/python3.11/site-packages/micropip/transaction.py", line 88, in _fetch_bytes
raise e
File "/lib/python3.11/site-packages/micropip/transaction.py", line 82, in _fetch_bytes
return await fetch_bytes(self.url, fetch_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/lib/python3.11/site-packages/micropip/_compat_in_pyodide.py", line 30, in fetch_bytes
result_bytes = await (await pyfetch(url, **kwargs)).bytes()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/lib/python311.zip/pyodide/http.py", line 308, in pyfetch
raise OSError(e.message) from None
OSError: Failed to fetch
at new_error (cdn.jsdelivr.net/pyo…dide.asm.js:9:12519)
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at _PyCFunctionWithKeywords_TrampolineCall (cdn.jsdelivr.net/pyo…ide.asm.js:9:123040)
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at Module.callPyObjectKwargs (cdn.jsdelivr.net/pyo…dide.asm.js:9:81732)
at Module.callPyObject (cdn.jsdelivr.net/pyo…dide.asm.js:9:82066)
at wrapper (cdn.jsdelivr.net/pyo…dide.asm.js:9:58562)

Sep 29 '23 14:09 guiguichau

@guiguichau would you be able to try again? This JupyterLite was updated to the latest packages so maybe that would fix your issue?

Looking fine when testing in a Firefox private window:

Oct 02 '23 07:10 jtpio

Hi @jtpio Thanks a lot for your reply. It still does not work even in a private window (I can only use Edge). Have a nice day.

Oct 02 '23 09:10 guiguichau

On an Edge private window, I do get a problem with the jupyterlite environment,

I have a question regarding whether the dependencies for the alpha versions of pyodide kernel are correct?

Error

comlink.mjs:51  Uncaught (in promise) PythonError: Traceback (most recent call last):
  File "/lib/python311.zip/_pyodide/_base.py", line 571, in eval_code_async
    await CodeRunner(
  File "/lib/python311.zip/_pyodide/_base.py", line 394, in run_async
    coroutine = eval(self.code, globals, locals)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<exec>", line 3, in <module>
OSError: [Errno 28] Invalid argument: 'notebooks'

    at new_error (pyodide.asm.js:9:12519)
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at _PyCFunctionWithKeywords_TrampolineCall (pyodide.asm.js:9:123052)
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at Module.callPyObjectKwargs (pyodide.asm.js:9:81732)
    at Module.callPyObject (pyodide.asm.js:9:82066)
    at wrapper (pyodide.asm.js:9:58562)
deserialize @ comlink.mjs:51
T @ comlink.mjs:317

Oct 02 '23 12:10 savakarrohan

I have repeated problems with pyodide kernel in Chrome, particularly status unknown, and then if I try to restart the kernel, unknown kernel (changing out to another kernel and back again does not necessarily resolve the pyodide status unkown report).

I'm not sure how to try to generate or find potentially log/debug messages?

Mar 15 '24 11:03 psychemedia

Fiddling with this a bit more, I can recreate one instance of the issue by:

opening a new pyodide notebook in Jupyterlite (lab);
from the Notebook-> link, open the notebook in Notebook. The Pyodide kernel typically shows status unknown.

Mar 15 '24 11:03 psychemedia

I know the cause. wasm does not function properly when Enhanced Security is enabled on Edge. jupyterlite/jupyterlite#1404 Check if WebAssembly is working on this site.

Jun 13 '24 00:06 911432