Some problem when using its package

[yuanlizhanshi]

1. when I load my bigwig file, it only works on my current work directory， such as : loadBigWig('../bigwig/my.bigwig') and get: Error in $<-.data.frame(*tmp*, "fileName", value = c("..", "/my"))

2. The import gtf function is comes from rtracklayer, but you did not mention it, which took me a while to find it.

[yuanlizhanshi]

3.trancriptVis function may take gene_name column in gtf to find the gene, but in many gtf file, it did not have gene_name column, replaced it with gene_id

[junjunlab]

loadBigWig has been fixed. trancriptVis does not support NCBI gtf file, please using gtf from UCSC, ENSEMBL or GENCODE database.

[yuanlizhanshi]

loadBigWig has been fixed. trancriptVis does not support NCBI gtf file, please using gtf from UCSC, ENSEMBL or GENCODE database.

But your reference gtf is hg19.ncbiRefSeq.gtf, I think there are some problems in your function

[junjunlab]

hg19.ncbiRefSeq.gtf is just an example, gtf from UCSC, ENSEMBL or GENCODE also can be used as trancriptVis input.