Julian Uszkoreit
Julian Uszkoreit
With the recent release of 2.7.0, almost all nodes in KNIME fail on my laptop with the following error: `/path/to/knime_4.4.1/plugins/de.openms.linux.x86_64_2.7.0.202109131426/payload/bin/FileFilter: error while loading shared libraries: libpcre.so.3: cannot open shared object...
It is set to use only M/Z and RT as default right now. - [ ] if only one file, more fields (especially sourceID, if given) could be used without...
Implement an alternative export for sequences and modifications together in one string. * the very simple lowercase-encoding for any modification (GQLTDLGAVNVmTGIyTGR) * or a better explaining one like GQLTDLGAVNVM(Oxidation)TGIY(Phosphorylation)TGR
Many programs parse accessions in FASTAs just like: "everything before the first blank is the accession" (e.g.OpenMS does this) To make PIA more compatible, make this an optional accession parsing,...
The exported tag `ms_run[1-n]-location` should link to the spectrum file if possible (can be mzML or RAW), not to the search results file. Files with link to search results are...
- Project Accession: [PXD003066] - URL Project: [https://www.ebi.ac.uk/pride/archive/projects/PXD003066] - PubMed Accession: [27498275]
- Project Accession: [PXD000534] - URL Project: [https://www.ebi.ac.uk/pride/archive/projects/PXD000534] - PubMed Accession: [25034945]
- Project Accession: [PXD012986] - URL Project: [https://www.ebi.ac.uk/pride/archive/projects/PXD012986] - PubMed Accession: [31699904]
[edited after adding fix for PSM parsing] 1. As XTandem's protein names tend to be abbreviated in the protein "label" tag, change the origin to the "note" tag. 2. While...