Julian Uszkoreit

This was fixed in #136, right?

When exporting PSMSets, all scores of the PSMs of the set will be exported, yes. When using only one search engine and combining the results of multiple ms_runs, no sets...

I will add this, will be back, if I need more info and/or have some progress.

Hej Xiwei, The actual source of the identification data for PIA does not really matter, but if you cannot transform it into mzIdentML, could you maybe inform me on which...

Hej Xiwei, Yes, I know the imzML format, but these are all spectrum-only formats if I am not mistaken. PIA on the other hands needs peptide (respectively spectrum) identifications to...

Hej Xiwei, If these spectra are MS/MS spectra (on the UTX you needed the "LIFT" for this) you could identify them. But, as you have no prior separation of peptides...

(closed due to inactivity)