Jules Jacobsen

Actually, some of this won't be possible - the order of Axioms coming out of the OWLAPI cannot be guaranteed as they use a HashSet internally and a HashMap both...

If you fancy having a dig around in the OWLAPI code you might be able to figure out a way to do this. The relevant entry point is `OWLOntology.getAxioms()`

Thanks for checking, this should be simple enough!

Can you also give me a preferred order for node, edge etc. fields?

Just to tantalise you I appear to have a fully reproducible OWL -> obographs -> json outputs the same every time. But it in the immutable branch Nico, could you...

Damn. Code review would be good, but there is hardly any code to review! The point of the change was to replace all the manual builder code with auto-generated code....

That would be awesome - do you want a new version number or the current 0.2.1?

Much appreciated- just change the extension to .jar [obographs-1.0.0 .zip](https://github.com/geneontology/obographs/files/4267626/obographs-1.0.0.zip)

```java File file = // your ontology file here // usual OWLAPI invocations: OWLOntologyManager m = OWLManager.createOWLOntologyManager(); OWLOntology ontology = m.loadOntologyFromOntologyDocument(file); // OboGraphs FromOwl fromOwl = new FromOwl(); GraphDocument gd...

Tried that last bit and did indeed find an error - please use this version! [obographs-1.0.0.zip](https://github.com/geneontology/obographs/files/4267829/obographs-1.0.0.zip) I really appreciate you taking the time to do this. Mind you, in the...