EmbedSeg
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[ISSUE]No json file for Evaluation Configuration
Describe the bug
I cannot find the json file mentioned in file EmbedSeg/tree/main/examples/2d/dsb-2018/03-predict.ipynb. This file is important for configuring evaluation process.
The code from notebook is as follows.
torch.hub.download_url_to_file(url = 'https://owncloud.mpi-cbg.de/index.php/s/H1pXwhq3aO4kJK3/download', dst = 'pretrained_model', progress=True) import zipfile with zipfile.ZipFile('pretrained_model', 'r') as zip_ref: zip_ref.extractall('') checkpoint_path = os.path.join(project_name+'-'+'demo', 'best_iou_model.pth') if os.path.isfile(os.path.join(project_name+'-'+'demo','data_properties.json')): with open(os.path.join(project_name+'-'+'demo', 'data_properties.json')) as json_file: data = json.load(json_file) one_hot, data_type, min_object_size, n_y, n_x, avg_bg = data['one_hot'], data['data_type'], \ int(data['min_object_size']), int(data['n_y']), int(data['n_x']), float(data['avg_background_intensity']) if os.path.isfile(os.path.join(project_name+'-'+'demo','normalization.json')): with open(os.path.join(project_name+'-'+'demo', 'normalization.json')) as json_file: data = json.load(json_file) norm = data['norm']
Can you provide this file in the project?