sga
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de novo sequence assembler using string graphs
Hello @luizirber @drio @kastman @hyphaltip @idot How to query occurrences of a sequence in .sai and .rsai files please ? I assume a search function featuring a binary search should...
Hi, as you can read in the Debian bug report sga does not build when using gcc 6 due to more strict type checking: ``` https://bugs.debian.org/811664 ``` It results in...
Hello, I am trying to run the sga pipeline, and I can't make the sga-astat work. The error that I get is: Traceback (most recent call last): File "/usr/bin/sga-astat", line...
When running ``` sga index --no-reverse directory/file.fastq ``` I would have expected the index files that are created to be `directory/file.bwt` and `directory/file.sai`, but they are actually put into the...
Hi, I'm trying to install SGA and have installed the google sparse hash library and bamtools. The `./configure` command seems to be hanging up on finding bamtools, since it returns...
I generate a report with preqc. Most pictures look well but it's not with the picture “variant branches in k-de Bruijn graph”. There is no y-axis title.  Can you...
In your Makefile, it is： ``` CFLAGS = -std=gnu99 -O3 CXXFLAGS = -std=c++98 -O3 ``` I have to change them into: ``` CFLAGS = -std=gnu++11 -O3 CXXFLAGS = -std=c++11 -O3...