methylation tsv file from modified bam?

[lkerr34]

Hi,

I know Nanopolish can output both tsv and modified bam when calling methylation but I wondered if you had (or knew of any) available scripts that would convert modified bam files into the Nanopolish tsv format? The repository https://github.com/jts/mbtools/tree/main seems to have scripts that provide methylation frequency information from modified bam files. However, I can't find anything that will take a modified bam and output the type of tsv file outputted by Nanopolish, where methylation information is given for each CpG independently in each read.

Thanks for providing such great software!