nanocorrect

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Error 1 when running nanocorrect-overlap.make

27

Hi! When i run nanocorrect-overlap.make i get this error: make -f nanocorrect-overlap.make INPUT=~/MinION/sspace_butyricum/all_reads_buty.fasta NAME=cor nanocorrect-preprocess.pl /home/mattia/MinION/sspace_butyricum/all_reads_buty.fasta > cor.pp.fasta fasta2DB cor cor.pp.fasta File cor.pp.fasta, Line 1502272: Warning: Read is longer than...

BoMatt

"No # -sign in source name" error occurred. ``` $(NAME).las: HPCcommands.txt /bin/bash $^ LAcat $(NAME) > $@ rm $(NAME).*.las ``` I think the input method has changed in LAcat. I...

gwlee

Odd error: ValueError: invalid literal for int() with base 10: 'all'

1

Hello, trying the tool for the first time. @OHRI-bell-virt ~/programs/nanocorrect $ make -f nanocorrect-overlap.make INPUT=/scratch/apelin/MinION_sequencing/Kevin_plasmid/MinION/Pass_2D_seqtk.fasta NAME=nc nanocorrect-preprocess.pl /scratch/apelin/MinION_sequencing/Kevin_plasmid/MinION/Pass_2D_seqtk.fasta > nc.pp.fasta fasta2DB nc nc.pp.fasta DBsplit -s50 nc DBdust nc HPCdaligner -t5...

apelin20

The daligner allow the error rate to be as high as 0.3, but still much lower than nanopore rate. So the sensitivity is not high enough. For example in the...

fxia22