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Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally Line no 18

Open vmevada102 opened this issue 9 months ago • 4 comments

I am receiving following error

--- SAMPLE AJTDEW -------- Contig tax file /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/intermediate/09.AJTDEW.contiglog already found, skipping step 9 [0 seconds]: STEP10 -> MAPPING READS: 10.mapsamples.pl Can't find SqueezeMeta_conf.pl in /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/AJTDEW. Is the project path ok? at /home/vishal/miniconda3/envs/squeezemeta/SqueezeMeta/scripts/10.mapsamples.pl line 18. Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally sh: /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/AJTDEW/syslog: No such file or directory sh: /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/AJTDEW/syslog: No such file or directory

If you don't know what went wrong or want further advice, please look for similar issues in https://github.com/jtamames/SqueezeMeta/issues Feel free to open a new issue if you don't find the answer there. Please add a brief description of the problem and upload the /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/AJTDEW/syslog file (zip it first)

As the original Path for the analysis is /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/

Why this tool is asking for /home/vishal/Desktop/squeezemetarun/anjana/anjana_td/AJTDEW/AJDEW

Kindly help to resolve this issue.

vmevada102 avatar May 19 '24 10:05 vmevada102