Lei Xiong

Hi, you can use this link https://www.dropbox.com/sh/9oieqeogmfj7qrc/AACbaRnGpTpvxcFO7db5yDY5a?dl=0 to download the data.

SCALE can only use single core of CPU for now while supports multi-GPUs on cuda device.

Try torch.set_num_threads(1) or refer to this link: https://github.com/pytorch/pytorch/issues/16894.

Add OMP_NUM_THREADS=1 or MKL_NUM_THREADS=1 before SCALE.py. e.g. OMP_NUM_THREADS=1 SCALE.py -d xx which works on our centos system, to use multi-cores, just modify the OMP_NUM_THREADS=num you want

Your three files's format is correct. It seem that your mtx file contains unknown char b'8\x1047', remove this may work. You can try to use the scipy.io.mmread function to read...

See the note on the README page: If come across the nan loss, try another random seed filter peaks with harsher threshold, e.g. -x 0.04 or 0.06 filter low quality...

It seems like your installation of Pytorch is not correct, please check out you can import torch correctly. If it is not this case, you can post the detailed error...

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