Jose Sergio Hleap

icon indicating a website link https://jshleap.github.io/ icon indicating an email [email protected]

icon company Independent consultant icon location Guelph icon location Senior Bioinformatics Consultant at ProCogia. Doctor in Biochemistry and Molecular Biology, Data scientist and bioinformatician.

Results 8 comments of Jose Sergio Hleap

Publish to Organization's repository.

Any advances on this? I have tried to publish in an organization I created and keeps not synchronizing.

Memory limits for local executor

Thanks for the answer @mattrasmus. I assumed that there is pre-allocation of memory per task as I am running out of memory for a medium sized dataset. I guess I...

Google cloud

Not quite, unless `image` can be a GCP uri? The ideal scenario would be that given an `image` and an `storage` uris, you could run "batch" in either of the...

Allowing cpus to be set annd used in run_alphafold.py

@Augustin-Zidek you mean in the requirements? newer versions of tensorflow don't need to be hardcoded. TF will check if a GPU is available and will use it and will default...

Allowing cpus to be set annd used in run_alphafold.py

Yeah, and what I am saying is that there is no need for the -cpu as TF will take advantage of GPU if one otherwise defaults to CPU. What I...

Launching dask-mpi clusters

Hello all! any advances in this "issue"?

Launching dask-mpi clusters

@kmpaul I guess I can use mprun in the meantime, but srun is the recommended command for SLURM. @rcthomas you mean away from running srun in salloc? If so, why?...

Too many threads spawed in DANCo().fit()

Hi! The user already has the OMP_NUM_THREADS and MKL_NUM_THREADS to 1. Also, the number of threads created is in the hundreds, which leaves me to believe that is related to...