NGmerge

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feature request: ubam input/output?

1

Pretty self-explanatory. We are trying to eliminate the need to ever process data in fastq format in our pipeline. We probably wouldn't need the ability to convert fastq to ubam...

eboyden

feature request: use false positive rate instead of error rate?

2

Hi, I'm a big fan of this software but was wondering if it might make sense to provide the option to threshold based on a false positive rate instead of...

eboyden

Hi, `https://github.com/bioconda/bioconda-recipes/blob/master/recipes/ngmerge/meta.yaml` uses the outdated `https://github.com/harvardinformatics/NGmerge` repository. Regards, Stephan

stephanflemming

Can we have a more detailed explanation in the documentation for how to appropriately structure a custom quality profile for the `-w` option.

Jdbeck66

increase highest possible Q value to comply with Aviti high quality data

2

Dear John, When I run ngmerge on Element Biosciences Aviti data I get the error `Error! Quality scores outside of set range` This is due to the extra quality of...

splaisan